Sphingomonas cannabina: LZK98_17670
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Entry
LZK98_17670 CDS
T08607
Name
(GenBank) Ig-like domain-containing protein
Organism
scab
Sphingomonas cannabina
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_6
Big_13
PUA_3
Cadherin_5
bMG3
Big_9
Big_8
CarboxypepD_reg
FlgD_ig
Motif
Other DBs
NCBI-ProteinID:
UIJ44857
LinkDB
All DBs
Position
complement(3761317..3767439)
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AA seq
2040 aa
AA seq
DB search
MTGDGEPGATVQIYSPDGTLIGTGTVAADGSYSAAVSPAQTNGERLTVTQTDAAGNVSDP
TIALAPDITAPDAPTAEVNDAGTVVTGRGEPGATVTIRDPAGTVIGTGPVGTDGTYTITL
TTPQTNGESLTATQADAAGNVSDPTAALAPDLTAPSAPSATVDATGTTVTGEGEAGASIT
VRDPGGNVIGTGTVDADGHYSVTLTTPQTNGESLSVTQSDAAGNVSDPTTALAPDITAPD
APTADVNDTGTVVTGTGEPGATVEVRDPDGNLIGTGTVDPDGNYTVTLTEPQANGETVTV
TQTDPAGNISDPTTALAPDITAPDAPTADVNDTGTVVTGAGEPGATVEVRDPDGNLIGTG
TVDPDGNYTVTLTEPQANGETVTVTQTDPAGNISDPTTALAPDITAPDAPTDLAVSDDGT
VLTGTGEPGASVEVTDENGAVIGTGAVNPDGSFSVTLTEPQVSGETLGVTQTDAAGNESP
QADVVAPFDIDAFDNSATAGIDLVPVVTPVDHGDANYLALVSLVGLDLQVLGVPNVAFTV
EPGHSLDAVFEYDALANIGVLSDYRVVVQKWDGTQWTSIDGSGQITLLDLGLLDGNAVAS
EALGPGEYRAFLTFEGTLGLGLLGSLSVTGTDSDFTDIASVDPIPASGNVITDAGPGGEV
DVVSPATVVHSVTVNGVTTDVTADGTTVTGQFGTLVINLDGSYTYTPHADASAIGQAEQF
QYTIRDSDGELETANLTITIGSDDITGAPVANDDQARVDVVYENVVDTIDPTVEFSFNTP
GLLGTGSGSDTFTVAANTSSDVTIIAVGGGALSALPTFTITIRDAGGAEVQTITATALAN
VLGLGAGLSLTVQDLPPGTYTFEVSSSSAVGLPFDTDVYLGQTITHLDDFQVQSTTNAEG
NLLDNDVAGSAFTELWVRDGTSFVEVEDGGRAITGLYGTLTISETGDYVYTPQADLPHSA
SDLIDSFTYQLVSPDGRTETATLQIVLDVSGAGTTDDPDPPTATVAPDGASVTGTGEAGA
TITARGSTGNVIGTGLVGLDGNYTVALTPPQINGERLTVVQTDIEGNVSDPVTAFAPDIT
APDAPTADVNDAGTIVTGTGERGATVTVHDPSGATIGTGTVGPDGTYTVTLTSPQTNGED
LTVTQTDGAGNTSAPATVTAPDSTVPDAPTASIDAAGAVVTGDGEAGATITVRDPGGNVI
GTGTVGADGHYSVTLTTPQTNGESLSITQTDPAGNISDPTTALAPDITAPDAPVAAVSPD
GTVVTGTGEPGARVDVHSPDGDLVGTGLVGPDGNYTVTLTEPQANGETVTVTQMDPAGNI
SDPTTTLAPDITAPDAPTGLAVSADGTTLTGTGEPGASVEVTDTAGAAIGTGTVNPDGSF
SVTLTPAQTHGEELGVTQVDAVGNVSPEATVFAPVDIDAFDNSATAGIDLVPVVTPVDHG
DANYLALVSLVGLDLQVLGVPNVAFTVEPGHSLDAVFEYDALANIGVLSDYRVVVQKWDG
TQWTSIDGSGQITLLDLGLLDGNAVASEALGPGEYRAFLTFEGTLGLGLLGSLSVTGTDS
DFTDIASVDPIPASGNVITDAGPGGEVDVVSPATVVHSVTVNGVTTDVTADGTTVTGQFG
TLVINLDGSYTYTPHADASAIGQAEQFQYTIRDSDGELETANLTITIGSDDITGAPVAND
DQAAAGVVYENVVDTIDPAVEFNFNTGPGLVILPSTGSGSDTFTVAANTSSDVTIIAVGG
GALSVLPTFTITVKDAGGAVVETVTQVALANVLGLGAGLSLTVDDLEPGTYTFEVSSTNT
VGLGFNTNVYLGQTITHFDDFQVASTTEATGDLLDNDVLGSAFISLRVNDGTGFVEVDDG
GRAITGLYGTLTVSETGEYSYAPRTDLPHSASDLIDSFTYQLVSPDGRTEAATLDVTIDV
SGAGTTGFAAFAATTFGAETADVIELGSLAAAPAEAAGADPSTMASLLYDMFEGRGDLEN
VLQAYLDEPKDDSTIGADADNGIPNTTEVMTVQSEVNDPLSYITIVDDPERDQINSTHLI
NT seq
6123 nt
NT seq
+upstream
nt +downstream
nt
gtgacgggagatggtgagcccggtgctaccgttcagatctactcgcctgacggcacattg
atcgggacgggaacggttgccgcggacgggtcctattcggcggccgtctcaccggcgcag
accaacggcgagaggctgaccgtcacgcagaccgatgctgcggggaacgtctccgatccg
accatcgcactggcgcccgacatcaccgcgcccgacgcgccgaccgcggaggtcaacgat
gccggcaccgtggtgacgggccggggcgagcccggcgccactgtcaccatccgcgatccg
gcgggcaccgtcatcggtacgggcccggtcggcacggacggcacctatacgatcacgctc
acgacgccgcagaccaatggtgagagtctgacggccacgcaagcggatgctgccgggaac
gtctccgatcccacggcggcgctcgcccccgatctcaccgcgccatcagccccttcggcg
acggtggacgccaccggtacgaccgtgaccggcgaaggcgaagcgggggcgagcatcact
gtccgcgatcctggcggcaacgtcatcggtacggggacggtcgatgccgacggccattat
tcggtcacgctgacgactccgcagacgaacggggaaagcctgtcggtcacgcagagcgac
gctgcggggaacgtctccgatccgacgacagcgctggcacccgacatcaccgcgccggat
gcgccgacggccgatgtcaacgacaccggcacggtggtgaccggcaccggcgagcccgga
gcaacggtggaggtgcgtgatccggacggcaatctgatcgggaccggcactgtcgatccc
gacggcaactacacggtgacgctgacggagccgcaagccaacggcgagacggtgacggtc
acgcagacggatccggcgggcaacatctccgatccgacgacggcgctcgcaccggatatc
accgcgccggatgcgccgacggccgatgtcaacgacaccggcacggtggtgaccggcgct
ggcgagcccggagcaacggtggaggtgcgtgatccggatggcaatctgatcgggaccggc
actgtcgatcccgacggcaactacacggtgacgctgacggagccgcaagccaacggcgag
acggtgacggtcacgcagacggatccggcgggcaacatctccgatcccacgacggcgttg
gcacccgacatcaccgcgcccgatgcgcccaccgaccttgcggtgagcgatgacggcacc
gtgctgaccggcaccggtgagcctggcgccagcgtcgaggtcacggacgagaatggcgcg
gtgatcggcaccggcgcggtcaatccggacggcagcttctcggtgacattgactgaaccc
caggtcagcggcgagacgctgggcgtcacccagaccgacgccgctggcaacgaatccccc
caggcggacgtcgtcgccccgttcgacatcgacgcgttcgacaacagcgctacggctggg
atcgacctggtgccggtcgtcacgccggtggaccatggcgacgccaattatctggcgctg
gtgtcgctggtcggtctcgacctgcaggtgctcggcgttccgaacgtggcgttcacggtg
gagccggggcatagcttggatgcggtgttcgaatatgacgcgctggccaacatcggggtg
ctcagcgattatcgggtggtggtccagaagtgggatggcacccaatggaccagcatcgac
ggctcggggcagatcacgctgctcgatctcgggctgctcgacggcaatgcggtggcgagc
gaggcgctgggaccgggcgagtatcgtgcgttcctgacgttcgagggcacgctcggcctg
gggctgctcggcagcctcagtgtcaccggcacggactccgacttcacggacatcgccagc
gtcgatccgatcccggcgagcggcaacgtcatcaccgatgccggtcccggcggcgaggtc
gacgtggtgagcccggcgacggtcgtgcacagcgtcaccgtgaacggcgtcaccacggat
gtgaccgcggacggaacgacggtcaccggtcaattcggcacgttggtgatcaatctcgac
ggcagctacacttacacgccccatgccgacgcgtcggcgatcgggcaggccgagcagttc
cagtacaccatccgcgacagcgatggtgagctggagaccgccaatctcaccatcaccatc
ggcagcgacgacatcaccggcgctcccgtggccaatgacgaccaggcgcgcgtcgacgtc
gtctacgagaatgtcgtcgacacgatcgatccgacggtggagttcagcttcaacacgccg
ggcctccttgggacgggatcgggcagcgacaccttcaccgttgcagcgaacaccagctcc
gacgtcacgatcatcgcggtcggaggaggggcgctgtccgccctgccgacgttcacgatc
acgatacgcgatgccggcggcgcggaggtacagacgatcacggccaccgccctggcgaat
gtgctcggccttggcgcgggcctgtcgctgacggtccaggatctgcctcccggtacctat
accttcgaggtgtcgagctcgagcgcggtggggctgcccttcgataccgacgtctatctg
ggtcagacgatcacgcatctcgacgacttccaggtacagagcaccaccaacgcagagggc
aatttgctcgacaatgatgtggccggctctgccttcaccgagctgtgggtgagggacggg
accagcttcgtcgaggtcgaggatggcggacgcgcgatcaccggcctctatggtacgctg
acgatcagcgagactggcgactatgtctacacgccccaggcggacctgccgcattcggcg
tcggacctgatcgacagcttcacctaccagctcgtctcgcctgacgggcgaacggagacc
gccacactccaaatcgtcctcgacgtctccggcgccgggacgaccgacgacccggatccg
cccaccgctaccgtcgcgcccgatggggcgtcggtcaccggcacgggcgaagcgggggca
acgatcaccgcccgcgggtcgactggcaatgtgatcggcaccggcctcgtcggtctcgac
ggcaactacaccgtcgcgctgacgccgccgcagatcaatggcgagcgcctgaccgtcgtc
cagaccgacattgaggggaacgtctccgatccggtgacagcgttcgccccggacatcact
gcgcccgacgcgccgacggccgacgtcaatgatgcaggcacgatcgtgaccggcacgggc
gaacgcggcgcgaccgttaccgtccatgatccgagcggcgcgacgatcggcaccggcacc
gtcggtcccgacggcacctatacagtgacgctgacctcgccgcagaccaatggcgaggac
ctgacggtcacgcagaccgacggcgccggcaatacgtccgcgcccgccacggtcacggcg
cccgactccaccgtcccggacgcgcccacggcatcgatcgatgccgccggcgcggtcgtg
accggagacggtgaggcgggggcgaccatcaccgttcgtgatcctggcggcaacgtcatc
ggcacgggtacggtcggtgcggacggccattattcggtcacgctgacgaccccgcagacg
aacggcgaaagcctgtcgatcacgcagaccgatccggcgggcaacatctccgatccgacg
acggcgctcgcacccgatatcaccgcgcccgacgcgccggtggcggcggtctcgcctgac
ggcacggtcgtgacaggcacgggtgagcccggggcgagggtggacgtccacagccccgac
ggtgacctggtcggtaccggcctggtcggccccgacggcaactataccgtcacgctgacg
gagccgcaggccaatggcgagacagtgacggtcacgcagatggatccggcgggtaacatc
tccgatcccacgacgacgttggcacccgatatcaccgcgcccgatgcacccactggcctt
gcggtgagcgccgatggcaccaccttgaccggtaccggcgagcctggcgccagcgtcgag
gttaccgatacggccggcgccgcgatcgggaccggcacggtcaatccggacggcagcttc
tcggtcacgctcactccggcgcagacgcatggcgaggaactgggcgtcacccaggtcgac
gcggtgggcaatgtttcgcccgaagcgaccgtgttcgcccccgtcgacatcgacgcgttc
gacaacagcgctacggctgggatcgacctggtgccggtcgtcacgccggtggaccatggc
gacgccaattatctggcgctggtgtcgctggtcggtctcgacctgcaggtgctcggcgtt
ccgaacgtggcgttcacggtggagccggggcatagcttggatgcggtgttcgaatatgac
gcgctggccaacatcggggtgctcagcgattatcgggtggtggtccagaagtgggatggc
acccaatggaccagcatcgacggctcggggcagatcacgctgctcgatctcgggctgctc
gacggcaatgcggtggcgagcgaggcgctgggaccgggcgagtatcgtgcgttcctgacg
ttcgagggcacgctcggcctggggctgctcggcagcctcagtgtcaccggcacggactcc
gacttcacggacatcgccagcgtcgatccgatcccggcgagcggcaacgtcatcaccgat
gccggtcccggcggcgaggtcgacgtggtgagcccggcgacggtcgtgcacagcgtcacc
gtgaacggcgtcaccacggatgtgaccgcggacggaacgacggtcaccggtcaattcggc
acgttggtgatcaatctcgacggcagctacacttacacgccccatgccgacgcgtcggcg
atcgggcaggccgagcagttccagtacaccatccgcgacagcgatggtgagctggagacc
gccaatctcaccatcaccatcggcagcgacgacatcaccggcgctcctgtcgccaacgac
gatcaggcggccgctggggtcgtctacgagaatgtcgtcgacacgatcgatccggcggtc
gagttcaacttcaataccggtccgggactcgtcatcttgccttcgaccggatcaggcagc
gacaccttcacggtcgcagcgaacaccagctccgacgtcacgatcatcgcggtcggagga
ggggcgctgtccgtcctgccgacgttcacgatcacggtcaaagacgccggcggcgcggta
gtggagacggtgacccaggttgcgctggccaatgttcttggactgggcgcgggtctcagc
ctgacggtcgatgacctggagccgggcacctacacgttcgaggtgtcgagcacgaacacg
gtaggcctgggcttcaacaccaacgtctatctgggtcagacgatcactcatttcgacgat
ttccaagtggcaagcacgaccgaagccacgggggatttgcttgacaatgacgtgctgggt
tcggcgttcatctcgttgcgggtgaacgacgggaccgggttcgtcgaggtcgacgatggc
ggacgggcgatcaccggcctctatggcacgctgacggtcagcgagacgggcgagtatagc
tacgcgccccgcaccgacctgccgcattcggcgtcggacctgatcgacagcttcacctat
cagctcgtctcgccggatggacgaaccgaggccgccacgctcgacgtcaccatcgatgtc
tccggcgctggaacgacggggttcgctgcattcgcggccacgacattcggtgcggagacg
gccgatgtgatcgagttgggcagcctcgctgccgcgccggccgaagccgccggtgccgat
ccgtcgacgatggcctcactcctctatgacatgttcgagggacgcggtgatctcgagaat
gtgctccaggcttatctcgacgaaccgaaggacgattcgacaatcggagccgatgctgat
aatggtataccaaataccactgaagtgatgacggttcaatctgaagttaatgatccactg
tcatacattactattgtcgatgatcccgaaagggaccaaataaattctactcatttaatc
tga
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