Sphingomonas cannabina: LZK98_18030
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Entry
LZK98_18030 CDS
T08607
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
scab
Sphingomonas cannabina
Pathway
scab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LZK98_18030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scab03021
]
LZK98_18030
03400 DNA repair and recombination proteins [BR:
scab03400
]
LZK98_18030
Enzymes [BR:
scab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LZK98_18030
Transcription machinery [BR:
scab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LZK98_18030
DNA repair and recombination proteins [BR:
scab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LZK98_18030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
IDH
Motif
Other DBs
NCBI-ProteinID:
UIJ44925
LinkDB
All DBs
Position
complement(3843242..3844306)
Genome browser
AA seq
354 aa
AA seq
DB search
MSVNAKNWQELKKPTGLEKKPGGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNVKQLAIRMQGEGPKRLQLAATGPGEVKAGDI
AVSGDIEVMNPDLVICHLDDGATLNMELTADAGKGYVPAASNRPADAPIGLIPVDALYSP
VRQVSYKVENTRVGQELDYDKLTLTVETDGTVTPEDAIAYAGRILQDQLALFVHFDDSAV
TRAAPVGVAAPAAGAEPAGDTATINRFLLKKVDELELSVRSANCLKNDNIIYIGDLVQKT
EAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEILG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcaacgcaaagaattggcaggaactcaagaagccgaccggtctcgagaagaag
ccgggcggcgacggcaagcgcaaggcgaccttcgtcgccgagccgctggagcgtggcttc
ggcctgacgctcggcaatgcgctgcgccgcgtcctgctctcgtcgctccagggtgccgcc
gtcacctcgatcaagatcgagaacgtgctgcacgagttctcgtcgctcgccggcgtgcgc
gaggacgtgaccgacatcgtcctgaacgtcaagcagctcgcgatccggatgcagggcgag
gggccgaagcgcctccagctcgccgcgaccggcccgggcgaggtcaaggccggcgacatc
gccgtgtcgggcgacatcgaggtgatgaaccccgatctcgtcatctgccacctcgacgac
ggcgcgacgctcaacatggagctgaccgccgatgccggtaagggctatgtccccgcggcg
tctaaccgtccggcggacgcgccgatcggcctgatcccggtcgacgcgctctactcgccg
gtgcgccaggtctcgtacaaggtcgagaacacccgcgtcggccaggagctcgactacgac
aagctcacgctgaccgtcgagaccgacggcacggtgacgccggaggacgcgatcgcctat
gcgggccgcatcctgcaggaccagctggcgctgttcgtccacttcgacgattcggcggtc
acccgtgccgccccggtcggcgtcgcggctccggcggcgggcgcggagccggccggcgac
accgcgacgatcaaccgcttcctcctgaagaaggtcgacgagctcgagctgtcggtgcgc
tcggccaactgcctcaagaacgacaacatcatctacatcggcgatctggtccagaagacc
gaggccgagatgctgcgcacgccgaacttcggccgcaagtccttgaacgagatcaaggaa
gtgctctcgagcatgggcctgcgcctcggcatggaaatccccggctggccgcccgagaac
atcgaagagatggccaagaagctggagcaggagattctggggtaa
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