Stomoxys calcitrans (stable fly): 106080855
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Entry
106080855 CDS
T07664
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
scac
Stomoxys calcitrans (stable fly)
Pathway
scac03020
RNA polymerase
scac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106080855
09124 Replication and repair
03420 Nucleotide excision repair
106080855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scac03021
]
106080855
03400 DNA repair and recombination proteins [BR:
scac03400
]
106080855
Enzymes [BR:
scac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106080855
Transcription machinery [BR:
scac03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106080855
DNA repair and recombination proteins [BR:
scac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106080855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
106080855
NCBI-ProteinID:
XP_013097908
UniProt:
A0A1I8PKW2
LinkDB
All DBs
Position
4:50706125..50716003
Genome browser
AA seq
1892 aa
AA seq
DB search
MATNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVI
DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPSNPK
IKEVVLKTKGQPRKRLAYVYDLCKGKKICEGGEDMDMTKDGQPADPNKKPGHGGCGHYQP
SLRRTGLDLTAEWKHVNEDSQEKKIQVTAERVWEILKHITDEECFVMGMDPKYARPDWMI
VTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEACGAAAHVILENIKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFITREQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTH
PDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNSLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTV
KLSNKSFEKRFKFDWSNERYMRKVFTDEVIKELSESGNALPELEIEWDQLCRDREALREI
FPNGDSKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPLRVINGVRDLLQRCVIVVGNDRL
SKQANENATLLFQCLVRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEENKF
QDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITETGEFK
AIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDASAHAETD
PMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRYGIEIANTMGSSILGGSGMFFGAVSTPS
MSPPMTPWQNCGTPRYFSPSGQMSGMTPGGPSFSPSAASEASGMSPSWSPAHPGSSPSSP
GPPMSPFFPPSPSVSPSYSPTSPTYTASSPGGASPSYSPLSPSYSPTSPAFGSTSPRYSS
TTPNFNPQSTGYSPSNSGYSPSSPVYSPTSPFHHSSSPSYTGSGGSNMYSPTSAYSPTSS
NYSPNSPSYSPTSPSYSPSSPSYSPSSPCYSPTSPSYSPSSPTYTPVTPSYSPSSPHYSS
SPHYSPASPAYSQTGVKYSPTSPKYSPPSPSYDGSAGSPQYTPGSPQYSPASPKYSPTSP
LYSPTSPQHSPANQYSPTGSSYSATSPRYSPNNMSVYSPGSTKYSPTSPTYTPTRNYSPA
SPMYSPTAPSHGYSPTSPAYSPSSPTYEDSEE
NT seq
5679 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaacgattcaaaggccccactgcggcaagtaaagcgtgtgcagtttggtatc
ctttccccagatgaaattcgacgtatgtccgtcaccgagggtggtgtccaatttgccgaa
actatggaaggcggccgtcctaaattgggtgggttgatggaccctcgtcagggtgttatc
gatcgaacatcaagatgtcaaacctgtgctggtaacatgacggagtgccctggacatttc
ggccatattgatttagccaaacctgtttttcacattggtttcataaccaaaacaatcaaa
attttacgttgcgtttgtttttattgctccaaaatgttggtatcgccgtcaaatccaaaa
atcaaagaagtggttttaaaaacaaaaggtcagccacgcaaacgtttggcctatgtttat
gatttgtgtaaaggtaaaaagatttgcgagggtggcgaagatatggatatgacaaaagat
ggacagccggctgatcctaataaaaaacctggacatggtggttgcggtcattatcaacca
tctcttcgtagaacgggactggatttaacggcagaatggaaacatgttaatgaagattca
caggagaaaaagattcaagttaccgctgaacgagtatgggaaattctaaaacacattaca
gatgaagagtgttttgttatgggtatggatccaaagtatgcacgccctgattggatgatt
gttaccgttttacccgttccacctctggccgtcagacctgctgtcgtcatgtttggtgca
gccaagaatcaggacgatttaactcacaaactttcggatatcataaaggccaataatgaa
ttgcgtaaaaatgaggcatgtggtgcggctgcccatgtgattctggaaaatataaaaatg
ttgcagtttcacgttgccacactggtcgataacgatatgcctggtatgcctagggctatg
caaaagtcgggcaaaccactaaaagctatcaaatcccgcttgaagggtaaagaaggacgt
attcgtggtaatttgatgggaaagcgtgttgatttctcagcacgtactgtcattactccc
gatccaaatttgcgtattgatcaggtcggtgtaccgcgctccattgcacaaaatttaact
ttcccggaattagtaacaccgtttaatatagatcgtatgcaagagctggtacgtcgtggc
aactctcaatatccaggagctaaatatattgtgcgtgacaatggcgaacgtattgatctg
cgtttccatccaaaaccatccgatttgcatttacaatgtggctataaagtggaacggcat
ctgcgtgacgatgatttggttattttcaatcgccagcccactctacacaaaatgagtatg
atgggtcatcgagttaaagttttgccatggtcaacgtttcgtatgaacttgtcttgtact
tccccatacaatgctgattttgatggagacgaaatgaacttgcatgtaccgcaatctatg
gaaacaagagcggaagtggaaaacattcacgtgacaccgcgacaaattattacgccacag
gctaacaaacccgtcatgggtattgtgcaggataccttgactgctgtacgtaaaatgaca
aaacgtgatgtcttcataacccgtgaacaaatgatgaatctgttgatgttcttgcccact
tgggatggcaaaatgccccaaccttgtattctaaagcctaaaccattgtggacgggcaaa
caaatttttacactaattattcccggcaatgtaaatatgatacgtactcactccacccat
cccgacgatgaagatgacggcccctacaaatggatttcacccggtgacacgaaagtaatg
gtagagcatggcgaattgattatgggcattttatgtaaaaagaccctgggtacctctgct
ggttctttgcttcacattgttttcttggaattaggtcacgaaattgctggtcgcttctac
ggtaacattcagactgtcattaacaattggctgttgttggagggtcacagtatcggtatt
ggtgacacaattgctgatcctcagacctataacgagattcagatggccattaagaaagct
aaagacgatgtcatcaacgttattcaaaaagcccacaacatggaattggaacccacaccc
ggcaatactttacgtcagactttcgagaaccaagtaaaccgtattctaaacgatgctcgt
gacaaaactggcggatctgctaagaaatcattgactgaatacaacagtttaaaggctatg
gtggtgtcgggttcgaagggctccaacattaatatctcccaggttattgcttgcgtaggt
cagcagaacgttgaaggtaaacgcattccctatggtttccgtaagcgcaccttgccccac
ttcatcaaagatgattacggtcctgagtccagaggcttcgtggaaaactcatatcttgcc
ggcttgaccccatccgaattttattttcacgctatgggtggtcgtgaaggtcttatcgat
actgctgtaaaaactgctgaaactggttatattcagcgtcgtcttataaaggctatggaa
tctgtaatggtaaactatgacggcaccgtacgtaattcagtgggccagcttattcagtta
cgttacggcgaagatggcttggctggagaaacagtggagttccagaatttgcctaccgtt
aaattgtccaacaaatcctttgagaagagattcaaatttgattggtccaatgagagatac
atgcgaaaggttttcacagacgaggtcataaaagaattgagcgagagtggcaatgctctg
cccgagttggagatagagtgggatcagctgtgtcgcgatcgagaagcgttgcgagaaatt
ttccctaatggtgattcaaaggttgtattgccttgcaatttgcagagaatgatttggaat
gtgcagaaaattttccatattaataaacgcatgcctactgatttgtcacctttgagggtg
attaatggtgttcgcgaccttctgcagcgttgtgtaattgtggtgggtaatgatcgtctc
tccaagcaggccaacgaaaatgccaccctgcttttccagtgtctggtaagatccacttta
tgcacaaagtatgttgccgaagagttccgcttgtctacagaggcttttgagtggttgata
ggagaaatcgaaaccagattccaacaggcccaggctaatcctggggagatggtgggcgcc
ttagccgctcagagtttgggcgagcctgccactcagatgacactgaacactttccatttt
gctggtgtatcttcaaagaacgtaaccttgggcgtaccccgtttgaaggaaattattaac
atttccaaaaagccaaaagctccttctctcaccgtctttttgacgggtggtgctgccaga
gatgccgagaaagccaagaacgtgttgtgccggctggaacacaccacactgcgcaaagtt
accgccaatacggccatctactatgaccccgatccccaacgaactgtcattgccgaggac
caggagttcgtcaatgtctactatgaaatgcctgactttgatccaacgcgcatttcgcca
tggctgctacgtattgaattggatcgcaaacgtatgacagataagaagttaactatggag
caaatcgctgagaaaatcaatgccggctttggcgatgacctcaattgtattttcaatgat
gacaatgccgataagctggttttacgtatacgtatcatgaataatgaagagaacaaattc
caagacgaagatgaagcggtcgacaaaatggaagacgatatgttccttcgctgcattgag
gcaaatatgttgtctgacatgacactgcagggtatagaggccattggcaaagtgtacatg
catttaccacaaacggacagtaagaagcgtattatcatcactgagactggtgaatttaaa
gctattggtgaatggttgctggaaactgatggtacttctatgatgaaagttctttcggaa
agagatgtcgatcctgtgagaacctcctccaacgatatttgtgagattttccaggtgttg
ggtatcgaagctgtgcgaaaatctgttgaaaaggaaatgaatgctgtgctgcagttctat
ggcctttatgtaaactatcgacatttggccttgttgtgtgacgtaatgacagctaaggga
catttgatggctatcacacgtcacggtatcaacagacaagatactggtgctcttatgaga
tgttcgttcgaagaaactgttgacgtgttgttggatgcttcagctcatgctgagacagat
cctatgagaggtgtatcggaaaatatcattatgggacagttgccaaaaatgggaacaggc
tgctttgatttactcttggacgcagaaaaatgtcgttatggcattgaaattgccaacacc
atgggctcgagcattttaggtgggtcgggtatgttctttggtgcagtatctacgcctagc
atgtcaccaccaatgacgccatggcaaaattgtggaactccaagatatttttctccttct
ggtcaaatgagtggtatgacacctggtggtcccagtttttcgccatctgcagcttcagag
gcttctggtatgtcgccaagttggtcaccagcacatcccggctcgtcgcccagttctcct
ggtccaccaatgtcgccatttttccctccatcgcccagtgtttcgccttcatattcgcca
actagccccacttatacagcgtcatcgccaggaggagcttcaccaagctattcaccactt
agtcccagctattcgccgacaagtccagcgtttggttcaacatcgcctcgttattcttca
acaactcccaattttaatccacaatcaacgggttattctccatcgaatagtggctattca
ccatcatctccggtttattctcccacttctcccttccatcattcttcaagtccatcgtat
acgggcagcggtggttccaatatgtattctccaacgagtgcttattcgccaacttcttca
aactattcaccaaattccccatcatattccccaacttctccctcgtactcgccctcaagc
ccctcttattcgccttcttctccttgctattctccaacttcaccatcatattctccctct
tcgccaacttatacgcctgttacaccttcatattctccatcatcaccacattattcctct
tcgcctcactactctccagcttcaccagcatattctcaaactggtgtaaaatattcgccg
acttcaccaaaatattcgccaccttcaccttcgtacgatggttcagcgggatcaccgcaa
tacacgccaggatcgccgcaatattccccagcttcacctaaatattccccgacgtctccg
ctgtattcgcccacctcgccacagcattcaccggccaaccagtacagccctaccggttca
agctattcggccacatcgccccgttactcgcccaataatatgtcggtttattcacctggt
agtacaaaatattcgccaacatcacccacgtacacaccaacacgtaattattcgccggct
tctcccatgtactcacccacggcaccatcgcacggttattcaccgactagtccagcctac
tcgcctagtagtcccacttatgaagacagcgaagaatag
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