Stomoxys calcitrans (stable fly): 106080922
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Entry
106080922 CDS
T07664
Name
(RefSeq) uncharacterized protein LOC106080922
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
scac
Stomoxys calcitrans (stable fly)
Pathway
scac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106080922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scac03021
]
106080922
03019 Messenger RNA biogenesis [BR:
scac03019
]
106080922
Transcription machinery [BR:
scac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106080922
Messenger RNA biogenesis [BR:
scac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106080922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
Pfc11_Clp1_ID
zf_PCFS4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
106080922
NCBI-ProteinID:
XP_059224420
LinkDB
All DBs
Position
5:complement(40100321..40129777)
Genome browser
AA seq
2010 aa
AA seq
DB search
MDIATKTQRECEERVAEEYLSSLSDLNCNSKPLINMLTMLAEENIEYAAVIVKVVEQHIA
KVPPEIKLPILYLIDSIVKNVKSTYVQLFSQCIVSLFCGVFEKVNEKIRERMYALRQTWN
EVFSAQKLYALDVKIKRLDNNWPITAKQPSIHVNPNFLKTANQAIPTEMEMILQDKTREL
LELKKRKLELELEATKKHLEEQEKQFSKTAEGVLPPVDAFVVANALQTVGIRPTPMGGQV
MPAVMAPGYMGPQAMALNPIRPSVYHHNIRGFRPNLHPGIMGDQTQATIPPAGNMGATVN
KPRVHPVNSALISSVRQRDPRLARQQLQQQQQQQQQQQQQQLQQSNHQQNAATSSSQLQT
ADISKNPRNERSHKSSERSRKSPTRSTSTSNSSSSRASSSRSGKSSSREKDRDRSKRSDS
LSAKSAANTERSKKLSSSSYGGSSSYGSKVDRLAASSSSSTSTSSNSAKCDKDAFEIAPL
SSAFKRKSTSPSSSPSKSRESKRSNKSRSARSKTSSRSPSPESSLGVYKNINTRRMSTTS
SSSSMMASPEKKMTKLPDDKEQKQEVKAAEDMAKSSIVDTTSANNNTDKKNLLSAPSSYS
LAGSNKIATSSTLSSAVMGHDQRVKAAESDTKDTGKRDADGGSKAGADTSPHEVSKDHDE
DIKKRPLAPHKDEEPLAKKSKSAKIDNLFGSEDVDLRQLMPPIAVSAQEETAPPPPPLNV
AAESNENWDNLKTEVAKAAPPKKSSLEDVRAKLAKTAKLNKLLKLGEKPNKDIDHRNKLA
ELQMNEDTQEANDEKIRTMIAQAQELLESKAINQEQYKKLVRNVMSINEDYKLKEAKRRE
SLNAFKEKSHNNDDGSNDSSERNAAREAILKKRIPRINKGGSGGPAGDVINIDSSNEGSA
GSGGGNMDEQPMRLVDDKHDSNDEPPLRNSRRDKRGGYKPSKWGDRVPDPPMMPAGLLQQ
QQQQQRPWNTLMAQNKRGNLGMPFRPNMPPNVRPPWSSSNNGPQHFPKGGPPMMAPHMRG
NNNAMPSMGPQSPIPPPPIMPRACNSIDNPQEDIVRTITIDGLAKEIRFYDQVAIVFMEV
DQPREIGFQNGQRTIYIDSHEPITLQFNHDYKPVTIDGETFNLRFGFPSRELFIDENWYE
IYFGGPAISVPIRNKMHMLKAEGPPPQVNIGNLRRDLVVGKINMIVDAHNVIPLFLDARV
QTFKLADMEHTVQFADNLLTVLLDGTPTRVEYGGLPKSLYLGANKYFVRFGALPQGVVAG
KVQIKDMIYVETKPSAINVETALNIPPAAGPMLAATESELSQADLQKPAETSVPILPAAA
LSSINIDELFQKLVSTGILGGASGILPAINSSNAQTTGPADQAGTTAAKPSEDESTEEVP
APPPLNVAESIKPIDLSKPESIKSRQAGIVATLFSGMQCSSCGVRFPPEQTIKYSQHLDW
HFRQNRRERDSSRKAHSRKWYYDLNDWIQYEEIEDVDEREKNFFETPQNDLEVIDETSNQ
RSTHSPIQSCPAGPDDVDRACDMCQEKFEQFYNEELEEWHLRCAIRVEDKIYHPLCYEDY
KASLNPPPAKPAEEELADTTEDEPSLIQIDDDNAVDIVIKVEEDSKDDKNDGGAKLDEDD
DDVIVLPNEEPSVTEIYDDDDDEYVPANVTREHMGNVHEEDEAGDLNETNESDVEIQEPH
IPFTDLDTYVEKELPEGDELSRTSFMNVKIKLEPNADEDEDDGFEDVGTVLIAPDEISIH
SSEETQTQLIESSTSAMSPILERPASTTPSVINDENETNAEPSVADLNNSMDGNMETGDE
HNLSAAGLVPTMPLASLVNKIKINITKNSVTTNSTASCSNSSTGTTTNTCKSNSSANSNS
SSLTEQSKGSLGSTSGGTTFNHIPTISTIPVLCGGGTTISSTQSSSMGGALYDEPSNIQT
ISSGSICDSSVSSISVIGSIYGSNGPATVIRPIPPAANVAKAPAKPATPPPPPVEETITY
ELKPELQKATLKKKEKVICGNETSGLCSIM
NT seq
6033 nt
NT seq
+upstream
nt +downstream
nt
atggatatagctacgaaaacccaacgagaatgcgaggaacgtgttgctgaggagtacctc
tccagtttgtcggatttgaactgcaacagcaaacctctaattaacatgctcacaatgttg
gccgaggaaaatatcgaatatgcagctgttattgtaaaagtcgtcgaacaacatatagca
aaggttcctccagagattaaattgcccatattgtatttaatcgattcaattgtaaaaaat
gtcaaaagcacatatgtgcaactcttcagccaatgtattgtcagtttattttgtggagtc
tttgagaaggtcaacgaaaaaattcgagaacgaatgtatgctctacgacaaacatggaat
gaagtattctcagcccaaaaactgtatgctctagatgtgaaaataaaacgtttggataac
aattggcccatcaccgccaaacaaccatcaatccatgttaatcccaacttcttaaaaact
gcaaatcaagccattcctacagaaatggagatgattttacaggacaagactcgtgaactt
ttggaattgaagaaacgtaaacttgaattagagctggaggctaccaaaaagcatttggag
gaacaagaaaaacaattttccaaaactgctgaaggcgttttgccaccagttgatgccttc
gtagttgccaacgccttacaaaccgttggtattcgacctacgcccatgggtggccaagtt
atgccagccgtaatggcacccggttatatggggccccaagctatggccctaaatcccatc
agaccatctgtatatcatcacaacattcgagggttcaggccaaatttgcatccaggcata
atgggcgatcaaacacaggccactattcctccagcagggaatatgggggcaactgtcaat
aagcctagagtgcatccggtaaactcagcattgatcagttcggtgcggcaacgtgatccc
aggctggcccgtcaacaactacaacagcagcagcagcaacaacagcaacaacaacaacaa
caattgcagcaatccaatcatcagcaaaatgctgcaacttcttctagtcaattgcaaaca
gcagatatttctaaaaaccctagaaatgaacgtagtcacaaaagcagtgaacgcagccga
aaatcgcctacaagatctacttctactagcaacagcagcagcagccgtgcatcatcgagt
cgttcgggcaaaagttccagtcgtgaaaaggacagagatcgcagtaaacgctccgattca
ttgtcagcaaagagtgctgctaacactgaacgtagtaagaaattatcatcatcgtcatat
ggtgggtcttcatcatatggcagcaaagttgacaggctggcggcttcatcgtcatcttcg
acgtcgacctcgtccaactcagctaaatgtgacaaagatgcatttgaaatagctcccctt
tcgagtgcattcaaacggaaatccacctcaccaagttcctcgcccagtaaatcaagagaa
tccaaacgttccaataaatctcgttcggcgcgcagcaaaactagttcacgcagtccatct
cctgaatcttcgttgggggtgtataaaaatatcaatacacgacgaatgtctaccacatcg
tcctcatcatctatgatggcctcacccgagaagaagatgactaaactgccggatgacaag
gagcagaagcaagaagtcaaagctgcagaggatatggcgaaatcctcaattgtagacact
acgtctgcgaataataatacagacaaaaaaaatttactatcagccccctcctcctattct
ttggctggaagcaacaaaattgcaacctcttctacgttgagctcggctgtgatgggccat
gatcagagggtcaaggctgctgaatccgacacaaaggacactggcaaacgtgatgctgat
ggcggaagtaaagctggagctgacacctccccccatgaagtaagtaaagatcatgatgag
gatatcaagaagaggcccttagcaccccacaaggatgaagaaccactggccaagaaaagc
aaatccgccaaaattgacaatttgtttggatctgaggatgtagatctgcgtcaattgatg
ccacccattgcggtgagtgcccaagaagagactgcacctccgccgcccccccttaatgta
gccgctgagtcgaatgaaaattgggataatcttaagactgaagttgcaaaagctgccccc
cctaagaagtctagtcttgaggatgttcgtgctaaattggcgaaaacagcaaaactaaac
aaattgctaaagcttggtgagaaacctaacaaagacatagatcaccgcaataaattggcc
gaactgcagatgaacgaggacacgcaggaggcaaatgatgaaaaaatccgcacaatgatt
gctcaagctcaagagttattggaatcgaaagccatcaaccaagaacaatataaaaagctt
gtgcgtaatgttatgtccatcaatgaggactacaaactgaaagaagccaagcgtcgtgag
tcactcaatgctttcaaagagaaaagtcacaataatgatgatggcagcaatgactcttct
gaacgcaatgcagccagagaagccatacttaagaaacgtataccccgtataaacaaaggt
ggcagcggtggtcctgccggcgatgttataaatattgactcctcgaacgagggtagtgcc
ggcagtggtggtggcaacatggatgagcagcctatgcgtttggtggatgacaagcatgat
tcgaacgatgaaccacccctgagaaatagtagacgtgacaagcgcggtggctacaaaccc
tcaaagtggggcgatagagtgcctgacccacccatgatgccagcaggtttgttgcaacaa
caacaacagcaacagcgcccttggaatacattgatggcacaaaataaacgcggcaattta
ggcatgcccttccggccgaatatgccaccaaatgtgcgtccaccctggtcgagtagtaat
aatggaccccaacatttccccaaaggaggaccgcccatgatggcaccccacatgagaggc
aataacaatgccatgccttccatgggtccacaatcaccgattccgcctcctcccattatg
cccagagcatgcaactccatcgacaatccccaggaagatattgtgcgtaccataaccata
gatggccttgccaaggaaattcgtttctatgatcaagtggccatagtctttatggaagtt
gatcagccacgggaaattggctttcaaaatggtcaacgtaccatatacattgatagccat
gaacccataacgttgcaattcaaccatgactacaagcctgtgaccattgatggtgagacc
tttaatttacgttttggattcccatctcgcgaattattcattgacgagaactggtatgaa
atctactttggtggtcctgccataagtgttcctattcgaaataaaatgcacatgctgaaa
gccgaaggtcccccgcctcaagttaacataggaaatttgcgacgtgatttagtggtgggc
aaaatcaacatgatcgttgatgcccacaatgttattcccctgttcttggatgctcgcgta
caaacttttaaattggctgacatggagcacacagtgcaatttgctgataatctgttgact
gtacttctcgatggcactcccacgcgtgttgaatatggaggtttgcccaaaagtctgtac
ctaggggcaaataaatattttgtccgttttggtgctctaccccagggcgttgttgccggt
aaggtgcaaatcaaggacatgatttatgtggaaacaaagccctcagcaataaatgtagaa
actgcactcaatattcctcctgctgctggccccatgttagctgcaactgaatctgaactc
agtcaagctgatctacaaaaacctgcagagacttcagtacccatattgccagctgccgca
ttaagcagcatcaatatcgatgaattattccagaaactggtgtccacgggaatattgggt
ggcgccagtggaatactgcccgccattaatagtagcaatgctcagacaacggggccagca
gatcaagctggaacaacggcggcgaaaccctctgaagatgaatcgaccgaagaagtgccg
gctcctccgcctcttaatgttgcagaatctataaagcccattgatctttccaaaccagaa
tcgataaaatctcgtcaagcaggtattgttgccaccctattttccggaatgcaatgcagc
agttgcggtgtacgtttccccccagagcagaccataaaatatagccaacatttagattgg
cacttccgacagaaccggcgtgagcgtgactcttcgcgcaaggcccactcccgcaagtgg
tactatgacctgaatgattggattcaatacgaggagatagaagatgtggatgaacgtgag
aaaaacttctttgaaacgccgcaaaatgacttggaagtcattgatgaaacctcaaaccag
cgatccacccactcgcctattcaaagttgcccagcaggtccggatgatgttgatcgagct
tgtgatatgtgccaagaaaagtttgaacagttctacaatgaagagctcgaggaatggcat
ttgaggtgtgcaattcgtgttgaggataaaatctatcaccccctgtgttacgaggattat
aaggcctcacttaatccaccacccgccaaaccagcagaagaagagctagccgacacaaca
gaagatgaaccttcacttatacaaatcgacgatgacaatgctgttgatattgtcataaaa
gttgaggaggatagcaaagatgataaaaatgacggtggcgctaaactggatgaggacgat
gatgatgtaatcgttttgcccaacgaagagccctcggtaacagaaatctacgatgatgat
gatgacgaatatgtacctgccaatgtaacccgcgaacatatgggcaatgttcatgaggaa
gacgaagcaggggatctcaacgaaacaaacgaatcggatgtggagattcaggaaccacac
ataccttttaccgatttggacacctatgttgagaaggagttaccagagggcgatgaatta
tctagaacctccttcatgaatgtgaaaatcaaactggagccgaatgctgacgaagacgaa
gatgatggttttgaagacgtgggtacagttttaattgcgccagatgaaatatcaattcat
agcagtgaagagactcaaacccaattgatagagtcttccacgtctgccatgtctcctatt
ctggaacgtcctgcctcaacaacgccatccgtcatcaatgatgaaaatgaaacgaacgcg
gagccttcagttgccgatttaaataattccatggatggtaatatggagactggggacgaa
cacaacttgtccgcagccggccttgtgcccaccatgcccttggctagtttagttaataag
atcaaaataaatattaccaagaactctgtaaccacaaatagcactgctagttgtagtaat
agctcaacaggaacgactacaaacacttgtaaaagtaactcctcagccaacagcaatagt
agtagtttgactgagcaatcaaaaggtagcctaggtagcacatcaggtgggactacattc
aatcacataccaactatatccactataccggtcttatgcggtggtggaactactatcagc
agtacccaatcatcctccatgggtggtgctttgtatgatgagccatcgaatattcaaacc
ataagctcgggcagcatttgcgatagtagtgtaagtagcatatcagtaattggcagtatt
tatggcagcaatggtcctgcgacagtaatccgacccataccgccagcagcaaacgttgcc
aaagctccagcaaaacctgccacaccaccaccgccgcctgtcgaggagaccattacgtac
gaactaaagccggagctgcagaaagccacgctcaagaaaaaggagaaggtgatatgcggc
aatgaaacttccggactttgttctattatgtag
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