Stomoxys calcitrans (stable fly): 106087550
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Entry
106087550 CDS
T07664
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
scac
Stomoxys calcitrans (stable fly)
Pathway
scac03013
Nucleocytoplasmic transport
scac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scac00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106087550
03015 mRNA surveillance pathway
106087550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scac03019
]
106087550
Enzymes [BR:
scac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106087550
5.6.2.5 RNA 5'-3' helicase
106087550
Messenger RNA biogenesis [BR:
scac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106087550
mRNA cycle factors
Common to processing body (P body) and stress granule
106087550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
AAA_22
NPHP3_N
nSTAND_NTPase5
ATPase
SRP54
nSTAND3
AAA_16
Motif
Other DBs
NCBI-GeneID:
106087550
NCBI-ProteinID:
XP_013108081
UniProt:
A0A1I8PHH0
LinkDB
All DBs
Position
4:180052614..180066860
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AA seq
1219 aa
AA seq
DB search
MSVDAYGPSSQNLTFLDTEENDLIGGGTQASDFDYRDLTLASQTQSQLEGGLLSSSGGIS
SQTFGRKLDLQTKLGTANGSTDLQFEEEDEDNALCTVDVLPNHACKYCGIHDPGTVVMCN
NCKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHSEGPLGETVLECYSCGVRNVFVLGFIP
AKADSVVVLLCRQPCAAQNSLKDMNWDQDQWKPLISDRSFLPWLVKVPTEQEQLRARQIS
AAQINKLEELWKDNIEATFQDLEKPGIDTEPSQVLLRYEDGYQYEKIFAPLVMLEAEYDK
KLKESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWDAIG
HVIKVPDNFGEDVGLELKSSAKAPIQCTSNFAVDFIWKCTSFDRMRRALKVFAIDRNSVS
NYIYSRLLGHGRHDGSDEVVFRGPPPKLYSAPNLPDLNRSQVYAVKHALQRPLSLIQGPP
GTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDS
PVNFLALHNQIRNMETNIELKKLQQLKDETGELSSADEKRYRSLKRTSENQLLEAADVIC
CTCVGAGDARLQRIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRKLKI
DFPWPQPDRPMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLKAGVKPEQIGIITP
YEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEKQGIGFLSD
PRRLNVALTRSKYGTIIVGNPKILSKQPLWNHLLNFYKDRKVLVEGSLNNLRESLIQFQK
PKKLVNTLNMGAHFMSTMMADAREAIIPGSFYDRSGQFGYTGGTTSNNYGYNFGNNLIGG
NNSGFSFANNTHMQGMGGMNNSSHLNSFMSSQAGGGASSGGGFGAPGAQRHNVNQMANNQ
LGGGSNNQQWHNFQHDSISYISTERAQAAMNNMPVPVGMFMNMSNIPPRFYNQHQQAIQA
AAKQGRRAAAPPSINMAPGHNAAKNAANKAPGKGRNAAGTTPSTTNALTSNAVAAAAAAA
SATSSQNSSAILTQKNMSQQMSQNVFPGLSQQPELSQDFGQISQMDGILSQDVGFGTDAL
NNDRLNLGLNSQSQFSQPY
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggatgcgtatggaccgagttcacaaaatctaacatttttggacacagaggag
aatgacttgattggtggcggcacccaggcatccgattttgattatcgtgaccttacattg
gcctcccaaacacaatctcaacttgaaggtggcttattatcgagcagtggcggtatttcc
tcacagacatttggtcgtaaattggatttacaaacgaaattgggcaccgctaatggctct
acagatttgcaatttgaagaggaggatgaagacaatgccctttgcaccgttgatgtacta
cccaaccatgcatgtaaatattgtggcattcatgacccgggaaccgtcgtaatgtgtaac
aattgcaaaaaatggttttgcaatggacgtggaagtacatctggctcgcatatagtcaac
catctggtaagggccaaacatcgtgaggtaacgctgcattcggaaggaccattgggtgaa
accgtcttggaatgttactcttgcggtgtgcgcaatgtattcgtattgggatttattcca
gctaaagctgactccgtagtggtgctgttgtgccgtcagccatgtgcagcccaaaactca
ttgaaggatatgaactgggaccaggatcagtggaaaccacttatatcggatcgctcgttt
ttgccatggttagtcaaggtccccaccgaacaggaacaactgcgagcaagacaaatatcg
gcggcacaaataaataaattagaggagctttggaaggacaatatagaggccacgtttcag
gacttggaaaaaccgggcattgacacagaaccatctcaggtgctgttgcgttatgaagat
ggctatcagtatgagaaaattttcgccccattggtaatgcttgaggcggagtatgataaa
aagttgaaggaatcccagacgcaagagggcattgaggttcgctgggatgtgggccttaac
aagaagacaattgcctactttacgctggccaaaacggattccgatatgaaactaatgcat
ggtgatgaattgcgcttgcgctatgtgggcgagttgcacaaagcatgggacgcaataggg
catgtcatcaaagtgcctgacaattttggcgaagatgtcggccttgagttgaagtcgtcg
gccaaagctcccatacaatgtacttcaaattttgccgtggactttatatggaaatgtact
tcattcgatcgcatgcgcagagccttaaaggtttttgcaatcgatcgcaactctgtttca
aattacatttactcgcgcttgctgggtcatggtcgccacgatggttcggatgaagtcgta
tttcgtgggcctccccctaaattgtacagcgcacctaacttacccgatctaaatcgatcc
caagtgtatgcagtcaaacatgcacttcaaagacctttgagcctcatccagggccctcct
ggcaccggcaaaacagtcacttcggccaccattgtatatcagctggtcaagcagcacggc
ggcactgttctcgtttgtgctcccagcaacactgccgtggaccagctgaccgagaagata
caccggacaaatttgaaagttgttcgggtttgtgccaagtcacgcgaagccatcgatagt
ccagtcaactttctagctcttcacaatcaaatcaggaacatggagacaaacatcgaactg
aaaaaactgcaacaattgaaagacgagacaggcgagttgtcttcggcagacgaaaagcgt
tatcgctcactgaagcgaacttcagaaaatcaattgctggaagcggccgatgttatatgc
tgcacttgtgtgggtgcgggcgatgcccgtttacagcgcataaaatttacatctatactc
atagacgaatccatgcagtctacggagccagagtgcatggtacccgtggtattgggtgcc
aagcagctgatcttagttggagatcattgccagctcggtccagtggttatgtgcaagaaa
gccgcacgtgctggcctctcgcagagcttgttcgagcgtctagtggtgcttggtatacga
ccattccgcttggaggttcagtaccgcatgcacccagaactatcgcaatttccctccaac
tttttctacgaaggttctttacagaacggcgtttgcgccgaggatcgaaagttaaaaatt
gactttccctggccccaaccggaccgtccaatgttctttttggtaacccaggggcaggag
gagattgccggttcaggtacgtcataccttaaccgtactgaagcagctaatgtcgagaaa
attacaacgcgtttcctgaaggccggtgtcaagccggaacaaataggaattataaccccc
tatgaggggcaaagggcctaccttgtacagtacatgcagtaccaaggtagcttgcactcg
aaactttaccaagaaatcgaaattgccagtgtggacgcgttccagggaagagaaaaggat
ataatcataatgtcctgcgtcaggtcaaacgaaaaacaaggcatcggttttctgagcgat
cccaggcgcttgaatgtcgccctaactcgctccaaatatggcaccattattgtgggcaat
cccaagatcctttcgaagcagcctttgtggaatcacttgctgaatttctacaaggatcgc
aaagtgctagttgaaggttccctcaacaacctgagagaatcgctgattcagttccaaaaa
cccaagaaactggtaaacacccttaacatgggcgcccacttcatgagcaccatgatggcc
gatgcaagagaagccattataccgggctctttctacgatcgttcagggcaattcggttat
accggtggcacaacctccaacaactatggctacaactttggcaacaacttaattggcggc
aacaattccggtttcagctttgccaacaacacccacatgcaaggcatgggcggcatgaac
aactcctcccatctaaacagcttcatgagttcccaggcaggtggcggagctagcagcgga
ggtggcttcggggcaccgggagcacaacgccataatgtaaatcaaatggcaaacaatcag
ttgggtggtggatcaaataatcagcagtggcataacttccagcatgactccatatcctac
atatcgacggaaagagctcaagccgctatgaacaacatgcctgtgccggttggtatgttt
atgaatatgagtaacatacctccacgtttctacaatcaacatcagcaagcaatacaggcg
gcggccaaacaaggcaggcgtgctgcagctccgccctccatcaacatggcgcccggccat
aacgccgcaaagaatgcagccaataaagctccaggaaagggacgtaatgccgcaggtact
actccgtcgaccacaaatgccctcacctccaatgctgtggcagcagcggcagcggcggca
tcagctacatcctctcagaattcttctgcaattctgacacagaaaaacatgtctcaacaa
atgagtcagaatgtgtttccaggcctgtcccaacagccagaactttcccaagattttggt
caaatatcgcaaatggatggcattctatcccaagatgttggatttggaacagatgctctc
aacaatgatcgcttaaatttaggacttaattctcagagccaattctcacagccctattga
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