Stomoxys calcitrans (stable fly): 106088561
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Entry
106088561 CDS
T07664
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
scac
Stomoxys calcitrans (stable fly)
Brite
KEGG Orthology (KO) [BR:
scac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scac03041
]
106088561
Enzymes [BR:
scac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106088561
Spliceosome [BR:
scac03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106088561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
R3H
HA2_C
OB_NTP_bind
AAA_22
nSTAND3
HA2_N
ATPase
ResIII
AAA_19
Ank_2
AAA_11
AAA_16
T2SSE
PhoH
Ank_5
AAA_30
Motif
Other DBs
NCBI-GeneID:
106088561
NCBI-ProteinID:
XP_013109593
UniProt:
A0A1I8NU02
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All DBs
Position
4:72218022..72224866
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AA seq
1145 aa
AA seq
DB search
MSTNTAGKRRQKAGGRHNDASTTATGQNNHRGKVERVNLPENERLPLQAKISEFLASSED
EIVLKGLSSIHRKYLHQYAAKRGLKSKSYGSTSNRELHIIKRKRLTALGDVKVLNITPAT
RATLQSLMPAIQSQLVTNQALLQPNSHHTHKGLRNESLSVSLGPRMIPPRPQRISKELCR
DKQELPIYQYQAELHQMLEQHNVFIVNGETGSGKTTQVPQYILNDATRRSRPCRIVVTQP
RRVAAVSVAHRVAEERGEPLGESVGYQIRMESRVKRTSNLIYTTSGCFLRSLMSDVRDLF
RKVSHLIIDEIHERDKNTDFTLITIKEQLKMNKDLKVILMSATMDIQLLSKYFDNCPVLN
VPGQGYDVKIYHLEDILYHTGYRTALMEKYLRSMNDNFPLPSTMFDDNILESGQRQTAVR
LEDKYLQQLLDTLIEQCCDNMETKTREELHEMFDQIQYYIESEGMNINAGHSESGITALM
AGCKCNMPDFVQFAIQRQANVLIRDNDGYEAIDYARLHQDGICLQIVMSSSHSAERTKQQ
AELSQQDKEKQKVLLAYQQQFNDDNEVDHDLILSLLEGLYRSAHPGAIMVFLPGYNDIVQ
QRNLIQSTLPGGTYKLCILHGQMDSKDQFEALQQHPVRKIILSTNIGQTSITIPDLAYII
DSGKVKMNTYDSITESSQLQSIWISQADACQRSGRAGRTQNGVCYRLYSLAKYQFMPQFS
IPEFMRIPLTEICLYAKTLEPKCEVQHYLQKSLNPPSSFSIQNALRKLKILGVFRDDESV
TELGKHLVDIPLDVQLGKCLMYGVFLKCYDPILTICSYHSVKDPFILPTDRSAQGQASFQ
RKSFAGQSFSDQMGILSLYKSYLEIRHNPRKVRDFCNKYFLSHSAMEMFCATRKQINDVM
KNKFNINYMDKMFNNDWHMIQLCLVAGFYPNVALIDRKGHKLICGAEKQLILQRSSALNP
PGKKHLKEFINQMPHDWIVFYEKSRISNTCTINMNTVVPSIMIALQCGRDCEVINNGGLD
DSDEEDDDDGNEDNDTDSDTSDKSLDTPVPTNDFEALQLKLAKTLENISLSNANNRSVLS
LDNWIKFELTSSDAKLLLLLRIALHTQFMAFLRTGPNSNTSNVAYCLQKLLHSLNSSAPS
LKFSV
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactaacactgcgggtaaacgtcgacaaaaagcaggtggtaggcataatgatgcc
tccactacggccactggccagaacaaccatcgtggcaaggtggagcgggtcaatctaccc
gaaaacgaacgtttaccattacaggcgaaaatttccgagttccttgctagcagcgaggat
gagattgtcctcaaaggtctgagcagcatacatcgcaaatacctacatcaatatgctgca
aaaagaggtctaaagagtaaaagttacggctccactagtaatcgtgagctgcacataatt
aagcgcaaacgcttgacagctctgggagatgtgaaagtgctaaatataacaccagcaacc
agggctacactgcaaagcctcatgccggctatacagtcgcagttggtcacaaatcaggct
ctactacaacctaactctcatcacacacataagggcctaagaaatgaatctttgtctgta
tctctgggaccacgcatgattccaccaagaccgcaacgtatcagtaaggaattgtgtcga
gataagcaagaactgccgatatatcaataccaggcggagttgcatcaaatgttagagcag
cataatgttttcatagttaacggagaaactggttcgggtaagacaacccaagttcctcag
tatatattaaacgatgccacaagacgtagtcgaccatgccgcatagtggtaacacagcca
agaagagttgccgccgtctctgtggcccatcgagtggctgaggaaagaggtgagccgctg
ggtgaaagtgtgggctatcaaatacgcatggagagtcgtgtaaagagaacttcaaattta
atatataccacatcgggctgttttttaagatcccttatgtccgatgtacgcgatctcttc
cgtaaggtgtcccatttgataattgatgaaattcacgaacgtgacaaaaacaccgatttc
acattgatcaccatcaaagaacaattgaaaatgaataaagatctcaaggttattcttatg
tctgccaccatggatattcaattgttatcgaaatatttcgataactgcccagtattaaat
gttcccggacaaggctacgatgtcaaaatttatcatttggaagatatactctatcatacg
ggctatcgcactgctttgatggagaaatatttacgctcaatgaatgataacttccccttg
ccctccaccatgtttgatgataacatacttgagtcgggccaaagacaaacagctgtgcgt
ttggaggataaatacttgcagcaactcttggatactctcatagagcagtgctgcgacaat
atggaaactaaaacgcgcgaagagctacatgaaatgttcgatcaaatccagtactatatt
gaaagcgagggtatgaatataaatgccggtcactcggagagcggtataaccgccttaatg
gctggctgtaaatgcaatatgcctgactttgtacaattcgcaattcagaggcaagccaac
gttttgatacgcgataatgatggctatgaggcaattgattatgctcgcctgcatcaagac
ggcatttgtttgcaaattgttatgagttcatcacacagtgcggaaaggacgaaacaacag
gcggagctgagtcagcaggacaaggagaagcagaaagtcctcttggcttaccagcaacag
tttaacgatgacaatgaagtagatcacgatttgattttgtccctgctcgaaggtctgtac
cgcagtgctcatccgggagcaataatggtattcttgcccggttataatgacattgtgcaa
cagagaaatttgatacaaagcactttgcctggaggcacttacaaactttgtatactacat
ggccaaatggactcgaaagatcaatttgaagcccttcagcagcatcccgttaggaagatt
atattgtccaccaacattggtcagacgtctataacaatacccgacttggcctacatcata
gactcgggtaaggttaagatgaacacttatgactccataacagagtcctcacaactccaa
tcaatatggatttctcaagctgatgcttgccaacgatctggcagggccggacgtacacag
aacggagtttgttatcgtttgtactccctggccaagtatcaatttatgccacagtttagc
ataccggaatttatgcgcataccgctgacggaaatatgcctgtatgcaaagactttggag
ccaaaatgtgaagttcaacattacttgcagaagtcattgaatccaccctcaagctttagt
attcaaaatgccttgagaaaactgaaaatactgggagtttttcgcgatgacgagtcggta
acagagttgggtaaacatctggtggatataccacttgacgtgcaattgggcaaatgtctg
atgtatggagtgttccttaaatgctatgatcccatattgaccatttgttcgtatcactcg
gtaaaggatccctttatcttgcccacagataggtcggctcaagggcaggcctccttccaa
cgcaagtcctttgcaggccaatcctttagcgatcaaatgggcatcctgtcgctgtacaag
tcctatttagaaattcgccacaatcctcgcaaggtgagagacttttgcaacaaatatttc
ctttcccattcggccatggaaatgttttgtgccacacgcaagcagataaacgatgtcatg
aagaacaaattcaacatcaattacatggataaaatgttcaacaacgattggcatatgata
caattatgtctggtggctggcttctatccgaatgtggcattgatagaccgtaagggccac
aagctcatatgtggcgctgagaagcagttgattttgcaaagatcttcagcccttaatcca
ccgggcaagaaacacctaaaagaattcatcaatcaaatgcctcacgattggattgtcttt
tatgaaaaatccagaatttccaacacctgcaccatcaacatgaatacggttgttccttcc
atcatgatagccttgcaatgtgggcgtgactgcgaggttatcaacaacggcggcttagac
gatagcgatgaggaggacgacgatgatggcaacgaagacaatgacacagattccgataca
tctgacaaatccctcgatacacctgtacctaccaatgatttcgaagctttgcaattgaaa
ttggccaagacattggaaaacatatctcttagtaatgccaataacagatccgtattgtcc
ctggacaattggataaaattcgagctgacatccagcgatgccaaactgctgttgcttctg
cgcatagcactgcacacgcaattcatggcattcttaaggactggacccaactcgaataca
tcaaacgtagcctattgtttgcaaaagctattgcattctctgaacagcagcgccccatcc
ctgaaattctcagtttaa
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