Stomoxys calcitrans (stable fly): 106089217
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Entry
106089217 CDS
T07664
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
scac
Stomoxys calcitrans (stable fly)
Pathway
scac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106089217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scac03021
]
106089217
03019 Messenger RNA biogenesis [BR:
scac03019
]
106089217
Transcription machinery [BR:
scac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106089217
Messenger RNA biogenesis [BR:
scac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106089217
U7-dependent histone pre-mRNA processing factors
106089217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
INTS1_R4
Cnd1
Motif
Other DBs
NCBI-GeneID:
106089217
NCBI-ProteinID:
XP_013110481
UniProt:
A0A1I8PAP9
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Position
2:220840431..220844325
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AA seq
1172 aa
AA seq
DB search
MDSILGRPQFLSETVNLFTDEKTAAARARVVEWFNEMATGDAQVKCELLVKIQETIIGSC
VELLEEFLESILSLVHDTNMEVRKQVVAFMEQICKVKVECLAQIINLVSMLLRDRSPQVI
KRVIQACGSIYKNGLQWICAQQELTDSGEKAWNVLSLIKAQILDLIDNDNDGIRTNAIKF
LEGVVVLQSFPDEDSQKKENDFSLENIPETLKIIKRQKLEEEALNIFDILLRFHGATHIS
SVNLIACTSSLCTIAKMRPSLMAPVVEAFKHLNSNLPPTLTDSQVSSVRKSLKMQLIALL
KNKGSYEYQSAIKHMLLDLGASQGEIQRSVPKMDKQEQLRRQKRILENATSNLSKKMRLG
PQHDRLDDAEKSKEQEMVIDEEELEKQRQKSNKVNEKYIAENIRSTEVAVNFVVDFLPKL
PESAPEAFLSEYVPIKDLSIPQQVSKISNLLGQQMTEQKIGPGSAAFTKEPPMKVKVVEA
SAEEAMDVDATPASVDEEQLRKEEATKKLRENMERVKGEQELIERMKQKAKALKLQEVTK
PFSRATKEKFLMDSVKRVLSAERQCIAGGVSAKRRKLLTIMAATFPDNVRYFIFDFIMLD
IKQRIDLAFSWLYEEYCLLQGFTRHSYVKSENRPDHAYNELLTKLVEGIIGKCEFRDKVI
LLRRVFMEAPLLPDEALKILLSEVLKEDYAAHGLELLKDLCILRPPRKAKTLRYLLHFSV
HERDDIRDKALEHIVDLYNTQKLLPPRIEEFALEWCTFLKKEIPPAVIFGEEYGRPVVET
GWREEIAKICLTVMLALMPHKPELFLDKLVHIYTNTSADLKRTMLRSIDGAIKALGPENV
LLLKLIEDCPKGCETLIIRIIYILTERQPVPQLELVLRVRELYANKIKDVRVLIPILAGL
TKPEIIKALPKLIKLNQVVVKEIFNRLLGIGPEFSNQMMATSPADVLVALHTIDVNECDL
KFIVKATSMCLAEKEVFTQDVLIGVLQQLVEIVPIPTLLMRTIIQSLTLYPRLGNFVLNL
LQRLIHKQVWRHKVIWEGFLKCVQRLKPTSLPVLLHLPAPQLNSALEQCPDLRQPLLEYA
QSIEDEPMSGVTPQIMDIITGNAVDVFITDDSGGFISVENIKKEIEEPMEISTISTVSTV
PVISTVVPVAQPPASATAMLPDANQPLPPGEE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggattccatactgggaaggccgcaattcctaagcgaaactgttaatttgtttacggat
gagaaaaccgcagcggcaagagctagagttgtggaatggtttaatgaaatggccacaggt
gatgcccaagtaaaatgtgaattactggtgaagatacaggaaaccataattggatcttgc
gttgagttgttggaagagtttttggaatctattctatcgttggtacatgacaccaacatg
gaagtgcgcaaacaagttgtggcatttatggagcaaatctgcaaggtgaaggtggagtgt
ttggcgcaaatcataaatttagtatccatgttgttgagagatcgttcaccacaagtaata
aaacgtgtcatacaagcctgtggcagcatttataaaaatggcctacaatggatttgtgca
caacaagaattgactgacagcggcgagaaagcttggaatgtccttagcctgataaaggca
caaatattggatttaattgacaacgacaatgacggcatacgcacaaatgccattaagttc
ttggaaggcgttgttgtactacaaagttttcccgatgaggatagccaaaagaaggaaaat
gacttctctctggagaacataccagaaacattaaaaatcattaaaagacaaaaactggaa
gaggaggctttaaatattttcgatattttgttaagatttcatggagcaacacacatttct
tcggttaatttaatagcatgcaccagtagtttatgcaccatagctaaaatgcgtcctagt
cttatggctcctgtggtggaggcctttaaacacctgaactccaacttgccgccaacattg
accgattcgcaagtcagttcggtgaggaaaagtttaaaaatgcaattgatagcattgttg
aagaataaaggttcctatgaataccaatcggccattaaacatatgcttttggatttggga
gcttcgcagggggaaatacaacgttccgtacccaagatggacaaacaggaacaattgcga
agacaaaaaaggattttggagaatgcaacaagtaatttgtccaagaaaatgcgtttaggg
ccgcagcacgaccgtttggacgatgctgaaaaatctaaggaacaagaaatggtaatcgat
gaggaggaattggaaaaacagagacaaaaatcaaacaaagttaatgagaaatatatagcg
gaaaatattagatccacagaggttgctgtaaattttgtggtagatttcttgccaaaattg
ccggaaagcgcccccgaagcatttctcagtgaatatgtgcccattaaagatctatctata
ccacaacaggtttcaaaaatatccaatttattggggcaacaaatgaccgagcagaagatt
ggaccaggatcggcggccttcaccaaagaacctcccatgaaagtaaaggtggtagaagcc
tcagccgaagaggccatggatgtcgatgcaacccctgcctcggtggatgaagaacaattg
cgtaaggaggaggccaccaaaaagctaagggaaaatatggagcgcgtcaagggagagcag
gagctcattgaacgcatgaaacaaaaggccaaagctttgaaactgcaagaggtaaccaaa
cccttctcccgagctactaaagagaagttccttatggattccgtcaaacgggtgctgagt
gccgaaaggcaatgtattgctggtggcgtctcggcaaagagaagaaagttgctcaccatt
atggctgccacctttcctgacaatgtgagatatttcatattcgacttcattatgctggat
ataaagcagagaatagatttggccttctcttggctgtacgaggaatattgcttgctgcaa
ggtttcactagacattcctatgtgaagtccgaaaatcgtcccgatcatgcatacaatgaa
ctcttgaccaaactagtagaaggcattataggcaaatgtgaatttcgcgacaaagttata
ttattgagaagagtatttatggaagctcctttgttgcccgatgaggcattgaagatatta
ttgagtgaggtgctgaaggaggattacgcggctcatggtctggaattgctaaaagatttg
tgcatattaagaccaccaagaaaagcaaaaactttgaggtatttgctacacttttctgtc
catgagagagacgatataagggacaaggctttggagcatattgtggacttgtataataca
caaaaattactaccaccacgcattgaggaattcgccttggagtggtgcacatttttaaag
aaggaaatacctccagccgtcatcttcggcgaagagtatggcagacctgttgtagagacc
ggctggagagaagagattgccaaaatatgtctaacggtaatgctggccctgatgccacac
aaaccagaattgttcttggacaagcttgtgcacatttataccaacacatcggccgatttg
aaaagaactatgttgagatccatagatggggccatcaaagcactgggacctgagaatgtg
ctgcttttaaagcttatcgaagactgccccaagggctgcgagacattgattatacgcatt
atctatatattgactgaaaggcagccggtaccacagttggaattggtacttagagtacgc
gaactttatgccaataagattaaagatgtgcgtgttttgatacccattttggccggcctc
accaagccggagataataaaagctttgcccaagttaatcaaactcaatcaagtggtggtt
aaggagatttttaatcgcttgctgggcataggaccagaattttccaatcaaatgatggca
actagtcccgccgatgtcttggtggctctgcacaccatagatgttaacgagtgtgaccta
aagtttattgtcaaagccacctcaatgtgtctggcagaaaaggaggttttcactcaggat
gttttgattggtgtgctgcaacaattggttgaaatagtaccaatacccacactgttgatg
cgtacaattatacaaagtttgaccttgtaccctcgcctgggtaattttgtattgaatctc
ttgcaaagactaatacacaaacaggtgtggcgacataaagtcatatgggagggtttcttg
aaatgtgtgcagcgtttaaagcccacttccttgccggtgttgttgcacttgcctgcgccc
cagttgaattcggcactagaacaatgtcccgatctgagacaaccgcttttggaatatgcc
caaagcatagaggatgagcccatgtcgggagtaacgccacagattatggatataataaca
ggcaatgcggtggatgtgtttattaccgacgattctggtggttttatatccgtggaaaac
atcaagaaggaaatcgaggagcccatggaaatatcgacaatttccaccgtttccactgta
cccgttataagcaccgtagtgccagtagcccaaccgcccgcttcagctacagctatgctt
cctgacgccaaccaacctttgcctcccggggaggaataa
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