Stomoxys calcitrans (stable fly): 106091221
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Entry
106091221 CDS
T07664
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
scac
Stomoxys calcitrans (stable fly)
Pathway
scac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106091221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scac03019
]
106091221
03041 Spliceosome [BR:
scac03041
]
106091221
Messenger RNA biogenesis [BR:
scac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106091221
Spliceosome [BR:
scac03041
]
Complex B
Other components
Prp19-related factors
106091221
Complex C
106091221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
Mad3_BUB1_I
TPR_15
ARM_TT21_C
ARM_TT21
TPR_10
PPR
RPN7
NRDE-2
Motif
Other DBs
NCBI-GeneID:
106091221
NCBI-ProteinID:
XP_013113149
UniProt:
A0A1I8P6J3
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All DBs
Position
5:30934934..30942496
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AA seq
885 aa
AA seq
DB search
MTINTATSLSMEIEFPDEDIPYEEEILRNAYSVKHWLRYIDHKSRAPNNAVNIVYERALK
ELPGSYKIWYNYLRTRRKQVRGKCITDAMYEEVNNTFERALVFMHKMPRIWMDYGTFMTS
QCKITRTRHVFDRALRALPVTQHHRIWPLYLKFVKRYDIPETGVRIFRRYLKLAPDDAEE
YIEYLLSVNRLDDAAQQLASIVDNEHFASKHGKSSHQLWTELCELISKNPDKVHSLNVDA
IIRGGLRRYTDQLGHLWNCLADYYVRSGLFDRARDIYEEAIQTVRTVRDFTQVFDEYAQF
EELSLNKRMEIVANDPDATEEDDIDVELRLARFEHLMDRRLLLLNSVLLRQNPHNVHEWH
KRVKLYEDKPHEIINTYTEAVQTVQPKLAVGKLHTLWVEFAKFYESNGQVDDARVVFERA
TEVEYVKVEDLASVWCEWAEMEIRQENFEEALKLMQKATVMPKRKVAYHDDTETVQMRLY
KSLKVWSMYADLEESFGTFKTCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRAY
EKGIALFKWPNVYDIWNAYLTKFLKRYGGSKLERARDLFEQCLENCPPEHAKYFYLLYAK
LEEDHGLARHAMAVYDRATSAVKQEEMYDMYNIFVKKAAEIYGLPRTREIYEKAIECLPE
ENMRHMCVRFAEMETKLGEVDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQFMTSGNTAADAAGSDAMRQLDARAKEVAAAANNQQAN
KPPAPTPTKPQNASNIMFVRGETQGGSAKDKVVNPDEIDIGDSEEEEDEEEDDDGNASET
ERNEAATRKDDNDLIMKKLRIEQKSIPAKVFGGLKTKANEDEEDD
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgactataaacaccgctacatccttatccatggaaattgaatttccggatgaagatatt
ccctacgaagaggaaatcctacgcaatgcttattctgtgaaacattggctgcgttacata
gatcacaaatcccgggcacccaacaatgccgtgaatattgtctacgaaagagctttgaaa
gaattgcctggaagctataaaatttggtacaattacttgcgtactcgaaggaagcaggtt
cgaggcaaatgcatcactgatgccatgtatgaagaagtcaataacacctttgagcgtgca
cttgtatttatgcataaaatgccacgcatttggatggattatggtacatttatgacatcg
caatgtaaaattacacgcactagacatgttttcgatagagctttacgtgctctgcctgtc
acacaacatcatcgcatatggcctttgtatttgaagtttgttaagagatacgacattcct
gagacgggtgtaagaatttttcgtcgctatttgaaattggctcccgatgatgcagaggag
tatattgaatatttgttaagtgtaaatcgtttggatgatgctgcccaacaactggctagc
attgtggacaatgagcactttgcctcaaagcatggcaagtcaagtcatcaactttggaca
gaattgtgtgagctgatatcgaaaaatccggataaagtacattcgttaaatgtggatgcc
attataaggggtggtcttaggagatatactgatcaactaggtcatctttggaattgtttg
gctgactactacgtacgctctggccttttcgatcgtgccagagatatctatgaagaagcc
atacaaactgtacgcacagtacgtgatttcactcaggttttcgatgaatatgcccaattt
gaggaactttctttgaataaacgcatggaaatagtagccaatgatccggatgccacagag
gaagatgacatagatgttgaattgcgtttggcgcgttttgagcatctcatggaccgacgt
ctactgttgttaaattccgtgttgctgcgtcaaaatcctcataatgttcatgagtggcac
aaacgcgttaagttgtatgaggataaaccccatgaaatcatcaacacctatacagaagct
gtacagacagttcagcctaagctggctgtgggtaaattgcacacactttgggttgagttt
gccaaattttatgaatcgaatggtcaagtagatgatgcacgtgttgttttcgaaagagcc
actgaagttgagtatgtcaaagtggaggacttggccagtgtttggtgcgaatgggctgaa
atggaaatacgccaagaaaacttcgaagaagccttgaagcttatgcaaaaggccacagtt
atgccgaagcgcaaggtggcctatcatgacgacaccgaaactgtgcaaatgcgactttac
aaatctctcaaggtgtggtctatgtatgccgatctcgaggaatcttttggcactttcaaa
acttgtaaggcggtctatgatcgcattatagacttgaaaatttgtacgccacaaattatt
attaactatggcctcttcttggaggaacataattactttgaagaagctttcagggcctat
gaaaagggcatagccctctttaagtggcctaatgtttatgacatatggaatgcttatcta
acaaagttcctcaagcgctatggcggctccaaattagaaagagcacgtgatttattcgag
caatgtttggaaaattgcccaccggaacatgcaaaatatttctatttgttgtatgccaaa
ttggaggaagatcatggtttggctcgtcatgccatggctgtgtatgatagggctaccagc
gcagttaaacaagaggaaatgtatgacatgtataatatttttgtcaaaaaggctgcagaa
atttatggtctgccacgcactagagagatctatgagaaggccattgaatgtttgccggag
gagaatatgagacacatgtgcgtacgttttgctgaaatggaaaccaaattgggagaggtt
gatagagccagggcaatatatgcccattgttcgcaggtttgtgatcctcgcattaccgcc
gacttttggcaaacttggaaagagtttgaagtgcgccatggcaacgaagacactatgcgg
gagatgttgcgtatcaaacgttctgttcaggccacttataatacccaggttaatatgatg
gcagctcagtttatgacctcaggcaatacggcagcagatgcggctggttccgatgctatg
cgacaattggatgccagagctaaagaggttgcagctgcagccaacaatcagcaagctaat
aagccaccagccccaacaccaactaagccacaaaatgccagcaacataatgtttgtgcgt
ggcgaaactcaaggtggctctgccaaggataaagtggttaatccagatgagattgatatt
ggtgacagtgaggaggaggaagatgaagaggaggatgacgatggaaatgctagtgagacg
gaacgaaatgaagcagccacacgcaaggatgataatgatctgattatgaagaaattgaga
atcgaacaaaagtcaataccggccaaggtgtttggaggtctcaaaaccaaggccaatgaa
gatgaggaggatgattag
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