Stomoxys calcitrans (stable fly): 106095278
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Entry
106095278 CDS
T07664
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
scac
Stomoxys calcitrans (stable fly)
Pathway
scac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106095278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scac03019
]
106095278
Enzymes [BR:
scac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106095278
Messenger RNA biogenesis [BR:
scac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106095278
mRNA degradation factors
3'-5' decay
Pan complex
106095278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
zf-CCCH_2
DUF7563
Motif
Other DBs
NCBI-GeneID:
106095278
NCBI-ProteinID:
XP_013117973
UniProt:
A0A1I8Q0L5
LinkDB
All DBs
Position
5:5992427..6003856
Genome browser
AA seq
1239 aa
AA seq
DB search
MDYVYCGDNIDVYDGGGSRSATHYSPNFTGFNLSSGEPDYMEMVPILADGGENFGVSAVT
FDSYEELLWMGNQGGHVTSYYSSNLQKYTSFQVHPTDIVRQISTIDSGILALTQTSLRHQ
IRRGIPKFTHKSKNMTEMVCMEQLSPHRLIMAGLQDEMIELDMRTLKETNLEHVGTAGCT
VLRQNSRFLFAGDPFGNVALRDLNSLHVEHTIKTHTGSLSDFDVQGNYLISCGYSGRQGT
LSVDRFLMVYDLRMLRLVSPIQVLIDPQLIKFIPSQTSRLAVVSSYGQVQLVDTVELSEP
RVSMYQINTSGSQCLLSFDVSSSSQVMAFGDQSGHISIITAVNAAQPQFNNFSRDTEFAD
PPPQLPIVPITDTTFPLSSIVLPPLVTGSRWFSDWPAELLRYQYLRSKPIEQDILNQMKM
QGPIGYSPNPRTQRRNQIPYVLENASGLAGSGNGLTIASKSSDSGVKIIPRRYRKVEMKY
SKLGTQDFDFEQHNQTCFAGLEATLPNSYCNPMLQVLYFIEPLRQKLLDHRCNKEFCLTC
ELGFLFYMFDKCTASTPCQASNFLRSFRTVPEASALGLILSDRSSNVNLLNLIQNWNRFI
LHQMHYEILETNKNDHLCNLRFSGALTCGGGTHPEEYQTEETSDIYFQGIDLKSDEHLKN
EEYQRERSKVNADTEISRLFGTKQTTVNRCLKCNEEKTKQSILLTCNLSYPHQSKEAEYF
NFGTILKGSLCSEKAIQAFCENCKKFSPSKQIIKVTGLPQMLTVNCGLNNERDLNFLRRH
LNRNSSNLSDSPATLNTNKPCRYGINCSRSDCHFLHPDRKSPTMNQNVNISPSGRQTSWF
PLSFSMAISENGELSVQTENSNTKATEANFTTCENQASNINNNVYSVNVNEDSYREYALH
AVVCQIDDGSQKNLVSLINVSKKYHTMKMETMGSPEDQQQWYIFNDFSISPVSNQESVWF
TLDWKVPCVLFYSSINLDKSEFDAIADIPHNEPQPLYNPFMKEISNIVVHGKNCGDTLLK
PLQLNEMPQAGDLVAMDAEFVTLNPQESEIRPDGKTATIKPCHMSVARISCIRGQGPDEG
IPFMDDYISTQEKVADYLTQFSGIKPGDLDANFSNKRLTALKYSYQKLKYLVDVGVLFVG
HGLKNDFRVINMFVPSEQIIDTVHLFHLPHHRMVSLRFLAWHFLGTKIQSETHDSVEDAR
TTLQLYKHYLQLQVENKFVAALKNLYDRGKQLQWRVPEE
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggattacgtttattgtggggacaatattgatgtttatgatgggggtggtagtcgttcc
gcaactcactactctcctaattttactggattcaacttgagctctggcgaacccgattac
atggaaatggttccaatacttgctgatggaggggaaaattttggagtgtcggctgtcaca
ttcgacagttacgaggaacttctatggatgggtaatcaagggggacatgtaacatcatac
tacagtagcaacttgcagaagtatacatcctttcaagtccatcccactgacatagtgcgt
caaatttccaccattgactcgggaattttggcgttgactcaaacctctttgaggcatcaa
atccgaagaggaattccgaaatttacacacaagtcgaaaaacatgactgaaatggtgtgc
atggagcaattgtcaccacaccgtttgattatggcaggtctgcaagatgaaatgattgaa
ctcgatatgagaacattaaaggaaacaaatttggaacatgttgggacggcaggatgcaca
gtgctaaggcaaaattcacgttttctttttgccggagatccatttggtaatgttgcattg
cgggatttaaactcactgcacgtcgagcataccattaagacacacactggaagtctttca
gattttgatgtgcaaggcaactatttgatatcatgtggatatagtggtcgtcagggaact
ctttctgtggaccgttttcttatggtctacgatttgcgaatgttacgcctggtgtcgcct
atacaagtgctgattgacccacagcttataaaatttataccttcgcaaacttctcgactg
gctgtggtttccagctatggacaggttcaactggttgatacggtagagcttagtgagcca
cgtgtatccatgtaccagatcaatacgtcgggtagccaatgtttacttagtttcgatgtc
agctcctcgtctcaagttatggcatttggtgatcaatctggtcatattagtattataacc
gcagtaaatgcagcacaacctcaattcaataacttttcgcgagacactgaatttgcagat
ccaccgccgcagttgccaattgtacccattactgatacaacattcccattatcatcgatt
gttttgcctcctttggtgactgggtcccgttggttttccgactggcctgcggagcttttg
cgctatcaatatttacgctcaaagccaattgagcaggacattttaaatcagatgaaaatg
caaggtcctatcggttattcccccaatcccaggactcaaagacgtaatcaaataccctac
gttttggaaaatgcaagtggacttgctggctcaggcaatggtcttacaattgcatccaag
tcttccgattccggtgttaagattataccaaggcgttatcgtaaagtcgaaatgaaatat
tctaaattggggacgcaggatttcgattttgagcagcataatcaaacgtgctttgctgga
ttggaagccacattgccaaattcttactgcaatccaatgctacaagtactgtattttatt
gaaccattgcgccaaaaattattggatcacagatgcaataaggaattttgtctaacatgt
gaactgggtttccttttctatatgttcgataaatgtacagcctctaccccgtgtcaggct
agcaatttcttgcgttcttttcgcacagtaccggaggcatcggcattggggcttatatta
tcggacaggtcttcaaatgtaaatcttttgaatttgatacagaattggaatcgtttcatt
ttgcatcaaatgcattatgaaattctagaaaccaacaagaacgaccatctatgtaatcta
aggttcagcggagcattgacatgtggtggtggaacacatccagaagaatatcaaacagag
gaaacgagtgacatatatttccaaggcatcgatctgaagagtgatgaacatttgaagaac
gaggagtaccaacgagaacgcagtaaagttaatgcagatactgagataagccgccttttt
ggcacaaaacaaaccactgttaaccgctgcctcaagtgcaacgaggagaagactaagcag
agcattctattgacatgcaatctcagctatccccatcaatcaaaagaggcagaatacttt
aactttggtacaatcttgaaaggatctctttgttcagagaaggccatacaagctttttgt
gaaaattgcaaaaagttttctccaagcaaacaaataataaaggtgacaggcctgccacaa
atgttaaccgtaaactgcggattaaataacgaaagggatttgaatttcttgagaaggcat
cttaatcgcaacagctctaatttatcggatagtcctgcaacgttaaatacgaataaacca
tgtcgttatggcataaattgttctcgcagtgactgtcatttcctgcatcccgaccgaaaa
tcaccaacaatgaatcaaaatgtaaatatttctccaagtggacgacaaacatcatggttt
cctttatcattttctatggccattagtgaaaatggcgaattgagcgtccaaaccgagaat
agcaatacaaaagctacggaagcaaattttacaacgtgtgaaaatcaagcttctaacata
aataataatgtttattcggtaaatgtaaacgaagattcataccgtgaatatgctttacat
gcagttgtttgccaaatagacgatgggtctcaaaagaatcttgtttctttaatcaatgtc
agcaaaaagtatcataccatgaaaatggaaaccatgggaagtccagaagatcaacagcag
tggtacatcttcaatgattttagcatttcgccagtatcaaaccaagaatcagtgtggttt
actttggattggaaagtgccttgcgtgttattttacagcagtatcaacttggacaagagt
gaatttgatgcaatcgccgatattccgcacaatgagcctcaacctctgtacaatccattc
atgaaagaaatcagtaacattgttgtacatggaaaaaattgtggagatacattattaaaa
cccttgcaactgaatgaaatgccgcaggccggtgatttggtcgctatggatgctgagttt
gtcaccttaaatccacaagagagtgaaatacgtccagatggcaaaacagcaaccataaaa
ccatgtcacatgagcgttgcgaggatttcatgtatacgcggacaaggtcccgatgaaggt
ataccattcatggacgattacatatcaacacaagaaaaagttgccgattacctaactcaa
ttttctggtattaaaccgggcgatttggatgcgaactttagcaataaacgtttgactgcc
ctaaaatattcgtaccaaaagctgaaatatttggtagatgtaggagttttatttgtcggc
catggattgaaaaatgattttcgtgttataaatatgttcgtcccctccgagcaaataatt
gacactgtacatttgttccatctgccgcatcatcgcatggtatctctacgttttttagcc
tggcattttttgggaacgaaaatacaatcagaaacacatgattctgtcgaggatgcccgc
actacgctgcagttatacaaacattacctgcaactacaagtggaaaataagtttgttgct
gcccttaaaaatctatatgatagaggcaagcagttgcagtggagagtacccgaggaatag
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