Streptomyces caniscabiei: IHE65_05055
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Entry
IHE65_05055 CDS
T08931
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
scae
Streptomyces caniscabiei
Pathway
scae03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
scae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IHE65_05055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scae03400
]
IHE65_05055
Enzymes [BR:
scae01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
IHE65_05055
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
IHE65_05055
DNA repair and recombination proteins [BR:
scae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IHE65_05055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
Zn_ribbon_RRN7
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
WEO22561
LinkDB
All DBs
Position
complement(1117873..1118742)
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AA seq
289 aa
AA seq
DB search
MPELPEVEALRDFLVDRLVGHEVVRVLPVAVSVLKTYDPPLSAFEGREITGVRRHGKFLD
LAGDGGELHLVTHLARAGWLQWKDRLPDGPPKPGGRSPLALRVALETGEGFDLTEAGTQK
RLAVHLVRDPAEVPGIARLGPDPLADDFDVTRFAGLLAGERRQIKGALRDQSLIAGIGNA
YSDEILHAARMSPFKMASSLRPEEVRHLHEALRTTLTEAVERSRGLAAGRLKAEKKSGLR
VHGRTGEPCPVCGDTVREVSFSDSSLQYCPTCQTGGKPLADRRLSRLLK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcccgaggtcgaggcgctccgggacttcctggtcgacaggctcgtcggt
catgaagtcgtccgcgtgctccccgtggccgtcagcgtgctgaagacgtacgacccgccc
ctgagcgccttcgaggggcgggagatcaccggcgtacggcggcacgggaagttcctcgac
ctcgcgggggacgggggagagctgcacctcgtgacgcatctggcgcgggccggatggctc
cagtggaaggaccggctgccggacggtccgccgaaacccggcggcaggagcccgctcgcg
ctgcgggtggccctggagaccggcgagggcttcgacctcaccgaggccgggacgcagaag
cggctcgcggtccacctcgtccgggacccggcggaggtgcccggcatcgcccggctcggc
ccggacccccttgccgacgacttcgacgtgacccgcttcgccggactgctcgccggggag
cggcggcagatcaagggggcgctgcgggaccagagcctgatcgcggggatcgggaacgcg
tacagcgacgagattctgcacgccgcgcggatgtcgccgttcaaaatggcctcgtcgctg
aggccggaggaggtccgccacctccacgaggcgctgcgcaccacgctcaccgaggccgtc
gagcgctcccgggggctggcggcggggaggctgaaggcggagaagaagagcgggctcagg
gtccacggccgtaccggcgagccctgcccggtgtgcggcgacaccgtccgggaggtctcc
ttcagcgactcctcgctgcagtactgcccgacctgtcagacgggcggcaaacccctcgcc
gaccgacggctgtcacggttgctcaagtag
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integrated database retrieval system
