Streptomyces caniscabiei: IHE65_08050
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Entry
IHE65_08050 CDS
T08931
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
scae
Streptomyces caniscabiei
Pathway
scae03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
scae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IHE65_08050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scae03000
]
IHE65_08050
03400 DNA repair and recombination proteins [BR:
scae03400
]
IHE65_08050
Enzymes [BR:
scae01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
IHE65_08050
Transcription factors [BR:
scae03000
]
Prokaryotic type
Helix-turn-helix
AraC family
IHE65_08050
DNA repair and recombination proteins [BR:
scae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IHE65_08050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
DUF6233
Motif
Other DBs
NCBI-ProteinID:
WEO29857
LinkDB
All DBs
Position
complement(1743896..1745380)
Genome browser
AA seq
494 aa
AA seq
DB search
MYADTERCVRAVRSKDARFDGWFFTAVLTTRIYCRPSCPVVPPKAENMTFYPSAAACQQA
GFRACKRCRPDTSPGSPEWDQRADLVARAMRLMGDGVVDREGVPGLARRLGYSARQVERQ
LLAELGAGPLALARAQRAQTARLLIETTALPMAEIAFAAGFGSIRTFNDTVREVFALSPS
ELRERATRSARQRSDSPGTSGVLSLRLPFRAPLNPDNLFGHLAATAVPGVEEWRDGAYRR
TLRLPYGHGIVALTPEPDHIACRLTLGDLRDLPVAISRCRRMLDLDADPVAVDEQLRTDA
LLAPLVDKAPGRRVPRTVDEAEFAVRAVLGQQVSTAAARTHAARLVVAHGEPVDDPEGGL
THLFPSPDALAAVDPETLAMPRTRRTTFTTLVGQLAAGTLHLGVDSDWAETRARLLALPG
FGPWTVDVIAMRALGDPDAFLAGDLGIRRAAAELGLPSTPAALTARAEAWRPWRAYAVQY
LWATDSHPINFLPV
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcggacacggaacggtgtgtgcgggccgtgcggtcgaaggacgcacggttcgac
ggctggttcttcacggccgtgctgaccacacggatctactgccggcccagctgcccggtg
gtaccgcccaaggcggagaacatgaccttctacccgagcgcggcggcgtgccagcaggcc
gggttccgggcctgcaagcggtgccggcccgacacgagcccggggtcacccgaatgggac
cagcgggcggacctggtggcgcgggcgatgcggctgatgggggacggggtcgtggaccgg
gagggcgtgccggggctggcgcggcggctcggctacagcgcccggcaggtcgagcggcag
ctgctggccgagctgggcgcgggcccgttggcactcgcccgggcgcagcgggcgcagacc
gcgcggctgctgatcgagacgaccgcgctgccgatggcggagatcgcgttcgccgccggg
ttcgggtcgatccggaccttcaacgacaccgtgcgggaggtcttcgcgctgtcgcccagc
gaactgcgcgagcgggcgacccggtcggcccggcagcgctccgactccccaggtacgtca
ggggtgttgagcctccggctgccgttccgggccccgctcaaccccgacaacctcttcggt
cacctcgccgcgaccgccgtacccggggttgaggagtggcgcgacggcgcgtaccggcgc
acgctccggctgccgtacggccacggcatcgtcgcgctcacaccggagcccgaccacatc
gcctgccggctcaccctcggcgatctgcgcgacctgcccgtcgccatcagccgctgccgc
cgcatgctcgacctggacgccgacccggtcgcggtcgacgagcagctgcgcaccgacgcc
ctgctcgccccgctggtggacaaggcgcccgggcgccgggtgccgcggaccgtcgacgag
gcggagttcgccgtacgggcggtgctcggccagcaggtctccacggccgccgcccggacc
cacgcggcccggctggtcgtcgcgcacggcgaacccgtcgacgatccggaagggggcctc
acccacctcttcccgtcccccgacgcgctggcggccgtcgatcccgagaccctcgcgatg
ccgcgcacccgccggaccaccttcaccacgctggtggggcaactcgccgccgggacactg
cacttgggtgtagacagcgactgggccgagacccgtgcccggctcctcgccctgcccggg
ttcggcccctggaccgtcgacgtcatcgccatgcgtgccctcggcgacccggacgccttc
ctcgccggtgatctcggaatccggcgcgcggccgccgagttggggctgccctccaccccg
gccgccctcacggcccgggccgaggcctggcggccgtggcgggcgtacgcggtccagtac
ctctgggcgacggacagccaccccatcaacttcctccccgtatga
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