Streptomyces caniscabiei: IHE65_09500
Help
Entry
IHE65_09500 CDS
T08931
Name
(GenBank) rhamnogalacturonan lyase B N-terminal domain-containing protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
scae
Streptomyces caniscabiei
Brite
KEGG Orthology (KO) [BR:
scae00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
IHE65_09500
Enzymes [BR:
scae01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
IHE65_09500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
DUF4397
NOMO1-like_2nd
EMC7_beta-sandw
Motif
Other DBs
NCBI-ProteinID:
WEO23378
LinkDB
All DBs
Position
2124094..2125776
Genome browser
AA seq
560 aa
AA seq
DB search
MSGSPERPTLGRRGFVVGTAATAAGAALAGPLAGTARAATFGYTDDGTNYVIDTGANLVF
KVRKSNGDLSSLVYRGVEYQGYGGMNSHIESGLGTSTVTIRQSGSTILVSVAYGTLRHYY
AARSGENNVYLWTNKADTSVSATRFIVRVKAGLFLNDQPDSYTYAPTTIEASDVFSKSDG
QTRSKHFSRLRVMDYDYVGWSANGVGLWVVRSNHEKASGGPFYRSLLRHQSADGGGLYEI
LYYGQNQTEEQRFGLQGPYVIAFTDGGAPSSSLFPGTLTTPWADSLGLSGYVSASGRGRV
AGVGITGRNTAYAYTVGLANSAAQYWGSARASDGFFSISGVLPGTYTLTVFKGELAVYTT
SVTVTAGGTTTLNSFAIPSTNDPSNASAIWRINDWNGTPSGFKNADLMTYAHPSDTRAAA
WTGNVVIGSGTETSAFPCYLWKDVNSGLLVYFRLTAAQAAAAHTLRIGVTTAYANGRPQV
VMNDTWTSAIPSPPTQPNTRSLTNGSYRGNNHTFTYSVPASAWLTDTSQYNVLKINVVSG
SGTTSYLSAGTAIDAIDLLS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtccggatcccccgaacgcccgacgctcggccgacgcggcttcgtcgtcggtaccgcc
gccaccgccgccggcgccgcgctcgccgggccgctggccggcaccgcccgcgccgcgacc
ttcggctacaccgacgacggcaccaactacgtgatcgacaccggcgcgaacctcgtgttc
aaggtcaggaagagcaacggcgacctgtcgtcgctggtctaccgaggcgtggagtaccag
ggctacggcggcatgaactcgcacatcgagtccggcctcggcacctccaccgtcaccatc
aggcagtccggctcgacgatcctcgtctccgtcgcctacggcacgctcaggcactactac
gcggcccgcagcggcgagaacaacgtctacctgtggaccaacaaggccgacacgtcggtc
tccgcgacccgcttcatcgtgcgggtgaaggcgggcctgttcctcaacgaccagcccgac
tcctacacctacgcgcccacgaccatcgaagcctcggacgtgttcagcaagtccgacggg
cagacccgctcgaagcacttctccagactccgcgtcatggactacgactacgtgggctgg
tcggcgaacggcgtcggtctgtgggtggtccgcagcaaccacgagaaggcctccggcggc
cccttctaccgctccctgctgcgccaccagagcgcggacggcggcggcctctacgagatc
ctgtactacggccagaaccagaccgaggagcagcggttcggcctccagggcccgtacgtc
atcgccttcacggacggcggggcgccctcctcctcgctgttcccgggcaccctgaccacc
ccgtgggcggactcgctgggcctgtccgggtacgtgtccgcgagcggccggggccgggtg
gcgggcgtcggcatcaccgggcggaacacggcgtacgcgtacaccgtgggcctcgccaac
tcggcagcgcagtactggggttcggcacgggcgtcggacggcttcttctccatctccgga
gtgctcccggggacgtacaccctcacggtgttcaagggtgagctggcggtatatacgacc
tcggtgacggtcacggcgggcgggacgacgacgctgaactcgttcgcgatcccgtccacc
aacgacccgtcgaacgcctccgcgatctggcggatcaacgactggaacggcacgccgagc
gggttcaagaacgccgacctgatgacgtacgcgcatccatcggacacccgggcggccgcc
tggaccggcaacgtggtgatcggcagcggaaccgagacctcggccttcccctgctacctc
tggaaggacgtgaacagcggtctcctcgtctacttccggctgaccgccgcgcaggccgcc
gccgcccacaccctgcgcatcggggtgacgacggcctacgccaacggccggccgcaggtc
gtcatgaacgacacctggacctcggcgatcccctccccgcccacccagccgaacacgcgg
tccctgaccaacgggtcctaccggggcaacaaccacacgttcacctacagcgtcccggcg
tccgcctggctgacggacacgagtcagtacaacgtgctgaagatcaacgtggtgagcggt
tcggggacgacctcctacctcagtgcggggacggcgatcgacgcgatcgacctgctgagc
tga
DBGET
integrated database retrieval system
