Streptomyces caniscabiei: IHE65_11140
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Entry
IHE65_11140 CDS
T08931
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scae
Streptomyces caniscabiei
Pathway
scae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IHE65_11140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scae03019
]
IHE65_11140
03400 DNA repair and recombination proteins [BR:
scae03400
]
IHE65_11140
Enzymes [BR:
scae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IHE65_11140
Messenger RNA biogenesis [BR:
scae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IHE65_11140
DNA repair and recombination proteins [BR:
scae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IHE65_11140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
AAA_22
Chorion_S16
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
WEO23684
LinkDB
All DBs
Position
2523411..2525591
Genome browser
AA seq
726 aa
AA seq
DB search
MSDEDLPPTDRQDLRTAADAVLARLVGAPAGAARLREDQWHAIEALVAEQRRALVVQRTG
WGKSAVYFVATALLRERGAGPTVIVSPLLALMRNQVEAAARAGIHARTINSSNTEEWDTI
RQEVTAGTVDVLLVSPERLNNPDFRDQVLPELAAATGLLVVDEAHCISDWGHDFRPDYRR
LRTMLADLPPRVPVLATTATANARVTADVAEQLGTGGGTDALVLRGPLDRESLSLGVLEL
PDAAHRMAWLADHLDELPGSGIIYTLTVAAAEEVTAFLRQCGHTVTSYTGKTENADRQQA
EEDLLANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLL
LPGKEDQAIWEYFASVAFPPEEQVRRTLDVLAHAERPLSLPALEPLVELRRSRLETMLKV
LDVDGAVRRVQGGWVSTGIPWTYDTERYAWVAKQRAAEQQAMRDYVTTSGCRMEFLRRQL
DDEEAAPCGRCDTCTKPRFADSVSSAALDAARGELGRAGVEVEPRKMWPTGLPAVGVNLK
GRIPAGEQAAPGRALGRLSDIGWGNRLRPMLAPQAPDGPVPDDVAKAVVGVLADWAKGPG
GWATGQPEAQPRPVGVVTMASRSRPQLIGSLGARIAEIGRLPLLGSVAYTGAVSQVTRSN
SAQRLKALDGALTVPPELAAALEEADGPVLLVDDATETGWTLAVAARVLRRAGAQGVLPL
VLVVRG
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaagacctgccccccacggaccgccaagacctgcgtacggccgccgacgcc
gtgctcgcccgcctcgtcggcgcgccggcgggcgccgcgcgactgcgcgaggaccagtgg
cacgccatcgaggcgctggtcgcggagcagcgcagagccctggtggtgcagcgcacgggc
tggggcaagtccgcggtgtacttcgtcgcgaccgcgctgctgcgcgagcggggcgcgggc
cccaccgtcatcgtctccccgcttctcgccctgatgcgcaaccaggtggaggcggccgcc
cgcgcgggcatccacgcgcggacgatcaactcgtcgaacaccgaggagtgggacacgatc
cgccaggaggtcaccgcgggcacggtcgacgtgctcctggtcagcccggagcggctcaac
aaccccgacttccgcgaccaggtcctgcccgagctggcggccgcgaccgggctgctcgtg
gtcgacgaggcgcactgcatctcggactggggtcacgacttccgccccgactaccgtcgg
ctgcgcaccatgctggccgatctgccgccgagggtcccggtgctcgccacgaccgcgacg
gccaacgcgcgcgtgacggccgatgtggcggagcaactgggcaccggtggcgggacggac
gccctggtcctgcgggggccgctggaccgcgagagcctgagcctcggggtgctcgaactg
ccggacgccgcccatcggatggcctggctcgccgaccacctggacgagctgccgggttcc
gggatcatctacacgctgaccgtggccgccgccgaggaggtgaccgcgttcctgcgccag
tgcgggcacaccgtgacgtcgtacaccggcaagacggagaacgcggaccggcagcaggcc
gaggaggacctcctcgccaaccgggtcaaagccttggtcgccacctccgcgctggggatg
ggcttcgacaagcccgacctggggttcgtcgtacatctgggctcgccgtcctcccccatc
gcctactaccagcaggtcggccgcgccggtcgtggtgtcgagcacgccgaggtgctgctg
ctgccgggcaaggaggaccaggcgatctgggagtactttgcctcggtcgccttccctccg
gaggagcaggtgcgccgaaccctggacgtgctggcgcacgcggagcgaccgctgtccctg
cccgccctcgaaccgctggtggaactgcgtcggtcccgtctggagacgatgctgaaggtc
ctcgacgtggacggcgccgtccgccgcgtccagggcggctgggtctccaccggcatcccc
tggacgtacgacaccgagcgctacgcctgggtcgccaagcagcgcgcggccgagcagcag
gccatgcgtgactacgtgacgacgtcgggctgccggatggagttcctgcgacggcagttg
gacgacgaggaggccgcgccctgcgggcgttgcgacacctgcacgaagcccaggttcgcg
gactccgtctcctcggctgcgctggacgctgcgcgcggcgagttggggcgggcgggggtc
gaggtggagccccgcaagatgtggccgaccgggctgccggcggtcggcgtcaatctgaaa
ggacgtattccggccggtgaacaggccgcaccgggacgagcgttggggcggctgtcggac
atcggctggggcaaccgactgcggccgatgctcgcgccccaggccccggacggcccggtc
ccggacgatgtcgcgaaggccgtggtgggtgtactggccgactgggcgaagggccccggc
ggctgggccacagggcagcccgaggcacagccgcgtccggtgggtgtcgtcaccatggca
tcccgtagcaggccgcagttgatcggttctctcggtgcccggatcgccgagatcggccgt
ctgccgctgctggggtcggtggcgtacaccggcgcggtttcccaggtcacgcgcagcaac
agcgcacaacgtctcaaggcgctcgacggggcactgaccgtgccccccgagctggccgcc
gccctcgaggaggcggacgggcccgtgctcctggtggacgacgccacggagaccggctgg
actctcgcggtcgcagcgcgcgtgctccggcgcgcgggcgcacagggggtgttgcccctc
gtgctcgtggtccgggggtga
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