Streptomyces caniscabiei: IHE65_41100
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Entry
IHE65_41100 CDS
T08931
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
scae
Streptomyces caniscabiei
Pathway
scae00040
Pentose and glucuronate interconversions
scae01100
Metabolic pathways
scae02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
scae00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
IHE65_41100
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IHE65_41100
Enzymes [BR:
scae01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
IHE65_41100
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
WEO29053
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All DBs
Position
complement(9339106..9340083)
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AA seq
325 aa
AA seq
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MRTVPPRTQAQRSALVAAAAALLTAATLAVPPSAGAAETSPIGYGAGTTGGGSASAVTVT
TLAAFQSAVAGNAAKVVRVNGLISLSGQVDIGSNTTVLGVGSSSGFTGGGLRIKEETNVV
VRNLNISKPVAPADGISVQESTKVWIDHNSFSADRTHDKDHYDGLLDINHGSDNVTVSWN
TFKEHFKGSLVGHSDKNASEDTGHLKVTYHHNHFSNVHSRIPSLRFGTGHFYNNYVDGAE
TACHSRMGAQMLVENNVFRNTGVAVTTNRSSDVDGYANLRGNDLGGAATEISRVGTFTTP
PYGYTAQSASSVVASVTSGAGAGKL
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaccgtccccccacgtacacaggcgcaaagatcagccctggtggcggccgcggcc
gccctgctgacggccgccaccctggccgtgccgccctcagcgggcgcggcggagacctcg
ccgatcggctacggcgccgggaccaccgggggcggcagcgcctccgccgtcacggtcacc
accctggccgcgttccagagcgccgtcgccggcaacgcggccaaggtcgtccgggtgaac
ggcctgatctcgctgagcggtcaggtcgacatcggctccaacacgacggtcctgggcgtg
ggttcgtcgtccgggttcaccggcggcggtctgcggatcaaggaggagaccaatgtcgtc
gtccgcaatctgaacatcagcaagccggtcgcgcccgccgacgggatctccgtccaggag
tcgacgaaggtgtggatcgaccacaactccttctcggcggaccgcacccacgacaaggac
cactacgacggtctgctggacatcaaccacggctcggacaacgtgacggtgtcctggaac
accttcaaggagcacttcaagggctcgctcgtcggccacagcgacaagaacgcctccgag
gacaccgggcacctgaaggtgacgtaccaccacaaccacttcagcaacgtgcactcgcgc
atccccagcctgcgcttcggcaccgggcacttctacaacaactacgtggacggcgcggag
accgcctgccactcgcgcatgggcgcccagatgctcgtggagaacaacgtcttccgcaac
acgggagtcgcggtcaccacgaaccgcagcagtgacgtggacggctacgcgaatctgcgc
ggcaacgacctcggtggggccgccaccgagatctcccgggtggggaccttcaccaccccg
ccctacggctacaccgcccagtccgcctcctcggtcgtcgcgtcggtgacgtcgggagcg
ggcgccgggaagctctga
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