Streptomyces caniscabiei: IHE65_43295
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Entry
IHE65_43295 CDS
T08931
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
scae
Streptomyces caniscabiei
Brite
KEGG Orthology (KO) [BR:
scae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scae03021
]
IHE65_43295
Transcription machinery [BR:
scae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IHE65_43295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
KORA
HTH_23
GerE
MarR
HTH_1
HTH_Crp_2
HTH_Tnp_ISL3
DUF7343
HTH_27
MarR_2
HTH_10
HTH_3
HTH_Tnp_4
Sigma70_ECF
Trp_repressor
YdaS_toxin
OrfB_IS605
HTH_24
Motif
Other DBs
NCBI-ProteinID:
WEO30288
LinkDB
All DBs
Position
complement(9849401..9850228)
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AA seq
275 aa
AA seq
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MADGVDLPLIEDPSQVRPKDAREMSRQFFDRLAMLDEGTHTYQYVRNTLIEMNLSLVRYA
ASRFRGREDSLEDIVQVGTIGLIKAIDRFELSREVEFTTFAVPYIVGEIKRFFRDTSWAV
HVPRRLQEARVELARATDELQSRLGRMPTTRELSELMSLSEEEVIEARKASNGYNTSSLD
AALTSDSGEDGDTVLGDLIGEEDHAMQLVEDFHSLAPLIAELDDRERRILHLRFVEEQTQ
SQIAEQLGVSQMHVSRLISRIIKRLRAGLLEPGVA
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggggtggacctgcccctgatcgaggacccgtcacaggtgaggcccaaggat
gcgcgggagatgtcccggcagttcttcgaccggctggccatgttggacgagggcacccac
acctatcagtacgtgcgcaacacgctcatcgagatgaatctctcgctggtgcggtacgcg
gcctcccgcttccgcgggcgcgaggactccctggaggacatcgtccaggtcgggaccatc
gggctgatcaaggccatcgaccgcttcgagctgtcccgggaggtggagttcaccacgttc
gccgtgccgtacatcgtcggcgagatcaagcggttcttccgggacaccagctgggcggtg
catgtgccgcggcggttgcaggaggcgcgggtggagctggcccgggcgacggacgagttg
cagtcccggctgggccggatgccgacgacccgtgagctgtcggagctgatgtcgctgtcc
gaggaggaggtcatcgaggcgcgcaaggcgtccaacggctacaacacctcctcgctcgac
gcggcgctcacctccgacagcggcgaggacggcgacaccgtgctcggtgacctcatcggc
gaggaggaccacgcgatgcagctcgtggaggacttccactcgctggcgccgctgatcgcc
gaactcgacgaccgtgagcggcggatcctgcatctgcggttcgtggaggaacagacccag
tcgcagatcgccgagcagctcggggtgtcccagatgcatgtgtcccggctgatcagccgc
atcatcaagcggcttcgggcgggcctgctggaacccggagtcgcctga
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