KEGG   Sellimonas caecigallum: ACI3DM_00910
Entry
ACI3DM_00910      CDS       T10803                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
scag  Sellimonas caecigallum
Pathway
scag03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scag00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACI3DM_00910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scag03019]
    ACI3DM_00910
Messenger RNA biogenesis [BR:scag03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ACI3DM_00910
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1 FCSD-flav_bind Lactamase_B_6 Lactamase_B_3
Other DBs
NCBI-ProteinID: XKQ21486
LinkDB
Position
complement(197937..199607)
AA seq 556 aa
MKKKNNSKLRIIPIGGLEQIGMNITAFEYEDSIIVVDCGLAFPEDDMLGIDLVIPDITYL
RDNISKVKGFVITHGHEDHIGALPYVLKQMNLPIYTTKLTMGIIENKLKEHNLMRCTKRK
VVRHGQSINLGKFRIEFIKTNHSIQDASALAIYSPAGVVIHTGDFKVDYTPVFGDAIDLQ
RFAEIGKKGVLALMSDSTNAERAGFTQSERTVGRTFDHIFAEHSNTRIIIATFASNVDRV
QQIINSAYKYGRKVVVEGRSMVNIISTAAELGYLDIPKNTLIDIDKLKNYPPEKTVLITT
GSQGESMAALSRMAADIHKKVTIMPGDTVIFSSNPIPGNEKSVSRVINELSAKGANVIFQ
DAHVSGHACQEELKLIYSLVKPKYAIPVHGEYRHMKANAGIAESLGIPKENIFILQAGDV
LELDDNGAKIAGHVQTGAILVDGLGVGDVGNIVLRDRQHLAEDGILIVVLTLEKGSNQLL
AGPDIVSRGFVYVRESEGLMEEAKEVLNVALEGCLASRNTDWSKIKLVIRDTMNEFIWKR
TKRRPMILPIIMDVEV
NT seq 1671 nt   +upstreamnt  +downstreamnt
ttgaaaaaaaagaacaattcaaaattgcgtatcattccaatcggcggactggagcagatt
ggaatgaatattactgcctttgaatacgaagacagtattattgtggtagactgcggtctt
gcgtttccggaggacgacatgctgggaatcgaccttgttataccggacatcacatatttg
agagataatatatcaaaagtaaaagggtttgtcatcactcatggacatgaggaccatatc
ggtgctctcccgtacgtgctgaaacagatgaacctcccaatctacactacaaagcttacg
atggggatcattgaaaataaattgaaagaacacaatctgatgcgctgtacgaaacgaaaa
gtggttcggcatggacagtccatcaatcttgggaaattccggatcgaattcatcaagaca
aaccacagtatccaggatgcatcggctcttgccatttattccccggcaggggttgtcatc
cacacgggggacttcaaggtggattatacaccggtgtttggcgatgctatcgatctgcag
agatttgcggagatcgggaaaaagggagtgctggcattgatgtcggacagtacaaatgca
gagcgtgccggatttacgcagtctgagcggacggtagggcgcacatttgaccatattttt
gcagaacattccaacacgaggattattattgcgacatttgcatcaaatgtagatcgtgtg
cagcagatcatcaactcagcttataagtatggaaggaaagtcgtagtagaaggccgcagt
atggtcaacatcatttctacggctgcagagcttggatatcttgatataccgaaaaacaca
ttgatcgatatcgacaaactgaaaaattatcctccggaaaaaactgtactcatcacgaca
gggagtcagggtgaatccatggccgcactttcaaggatggccgcagatatccacaaaaaa
gtgacgatcatgcctggcgatactgttattttcagctccaatccgataccggggaacgaa
aagtcagtttccagagtcatcaatgaactttctgcaaaaggcgcaaatgtcattttccag
gatgctcatgtttccggacatgcttgccaggaagaattgaaactgatctattctctcgta
aaaccgaaatatgccatcccggtacacggggaataccgacatatgaaagcaaatgcaggg
attgcggaatcccttggtatcccgaaggaaaatatttttattcttcaggcgggagacgta
ttggaattggatgacaatggggcgaagatcgcaggacatgtacagacaggagcgattctt
gtggacggccttggagtgggagatgtcggaaatattgtactccgtgaccggcagcatctg
gcggaagacggcattcttatcgttgtcctgacgttggagaagggaagtaatcagcttttg
gcagggccggatattgtgtccagaggatttgtctatgtgcgagaatctgaaggattgatg
gaagaggccaaagaagtgctgaatgtagcgttggaagggtgccttgccagcagaaataca
gactggagcaagattaaactggtaattcgtgacacaatgaacgaatttatctggaagcgg
acaaagagaagaccgatgatccttccgatcatcatggacgtggaagtataa

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