Sellimonas caecigallum: ACI3DM_04790
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Entry
ACI3DM_04790 CDS
T10803
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
scag Sellimonas caecigallum
Brite
KEGG Orthology (KO) [BR:
scag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scag03009
]
ACI3DM_04790 (rlmD)
Enzymes [BR:
scag01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACI3DM_04790 (rlmD)
Ribosome biogenesis [BR:
scag03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACI3DM_04790 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
MTS
Methyltransf_25
Methyltransf_4
PrmA
N6_N4_Mtase
UPF0020
TrkA_N
Methyltransf_11
TRM
Methyltransf_12
MethyltransfD12
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
XKQ22200
LinkDB
All DBs
Position
complement(1008606..1010036)
Genome browser
AA seq
476 aa
AA seq
DB search
MDTQEYTCRLKEKGCGGCPLLGIPYEEQLKKKQKDVKKLLGKFGKIQPILGMENPWHYRN
KAISTFAFGPGRQLISGIYAKGSHYVLPVETCLLHHPELDAAVKAVRKAARLCKYKPYDE
DRKTGLIRHTLVRHSLLTDEILVVLVTAEPSLPGAKTFVKELRKSCPKVATVIQNINPRS
TSAVLGFQEKILYGKGYITDSLCGVRFRISGSSFYQINPIQTEVLYRTAIDAAGLTGNET
VLDAYCGVGTIGLAAAAHAKSVLGIEKNASAVRCAVQNAKDNQIQNAKFINGDATEVILK
MAARGERADVVFLDPPRAGSTPEFLGAVSRMNPEKIVYISCNPETQKRDLETLRKTGWKA
KKIVPVDLFPGTEHVETVVLLSKLNTKQHIEVELNLDELDLTAAESKATYEEIREYVLEH
TGLKVSHLYIAQVKQKYGIIERENYNKPKSENSRQPKCPPEKEAAITEALKFFGMI
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggacacacaggaatatacatgcagattaaaagagaaaggatgcgggggatgtccgctt
cttggaataccgtacgaagaacagctcaagaaaaaacagaaagacgtcaaaaagcttttg
ggaaaattcgggaagatccagccgatcctggggatggagaatccatggcattacaggaat
aaggcgatctccacgttcgctttcgggccaggccgccagctgatcagcgggatttatgcg
aaaggctcccactacgttctgcctgtagaaacctgccttctgcatcatccggaactggat
gcggcagtcaaagcagtgcggaaagctgcacgcctgtgcaaatacaaaccgtacgatgag
gacagaaagaccggactcatccgtcacacccttgtaagacacagcctgctcacagatgag
attcttgtcgtgcttgtcacagcggaaccatccttgccgggagcaaaaacttttgtaaaa
gaactccggaaaagctgtccgaaagtcgctacagtgatccagaatatcaatccgcgatcc
acaagcgccgtcctgggattccaggagaagatcctgtacggaaaaggctatatcacagac
tccctctgcggcgttcgtttccgcatttccggatccagcttctatcagatcaatccgatc
cagacagaagtcctttaccgtacagcaatcgatgcggcaggacttacaggaaacgagaca
gtgctggatgcatactgcggagtgggaacgatcggacttgcagccgcggcacatgcaaaa
agcgtgttgggaattgagaaaaatgcaagtgcagtcagatgtgccgtacagaatgcaaag
gacaaccagattcaaaatgcaaaatttatcaacggcgatgcaacagaagtgatactgaag
atggctgcaagaggcgagcgcgcagacgtcgtctttctggatccgccgagagccggcagc
acaccggaatttttgggcgcggtaagccgcatgaacccggaaaagatcgtctacatctcc
tgtaatccggagacacagaagcgagatctggaaacactgcgcaagacaggatggaaagcg
aagaaaattgtgccggtggatctctttccggggacagaacatgtggagacggttgttctt
ttgtccaaactcaatactaagcaacatatcgaggtggagttgaatctggatgagctggat
ttgacagcggcggagagcaaggctacctatgaggaaatcagagagtatgtgctggaacat
acagggctgaaagtcagccacctctatatcgctcaggtcaagcagaagtatggcattatt
gagcgagaaaactataataaaccgaagtctgagaattccagacagccgaaatgcccaccg
gaaaaggaagcggcaattacagaggcattgaagttctttgggatgatttaa
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