KEGG   Sellimonas caecigallum: ACI3DM_07640
Entry
ACI3DM_07640      CDS       T10803                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
scag  Sellimonas caecigallum
Pathway
scag03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:scag00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ACI3DM_07640 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:scag03021]
    ACI3DM_07640 (rpoC)
   03400 DNA repair and recombination proteins [BR:scag03400]
    ACI3DM_07640 (rpoC)
Enzymes [BR:scag01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ACI3DM_07640 (rpoC)
Transcription machinery [BR:scag03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ACI3DM_07640 (rpoC)
DNA repair and recombination proteins [BR:scag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ACI3DM_07640 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid
Other DBs
NCBI-ProteinID: XKQ20272
LinkDB
Position
1579681..1583466
AA seq 1261 aa
MTGTNSEATYQPMTFDAIKIGLASPEKILEWSRGEVTKPETINYRTLKPERDGLFCERIF
GPSKDWECHCGKYKKIRYKGVICDRCGVEVTKASVRRERMGHIALAAPVSHIWYFKGIPS
RMGLILDLSPRTLEKVLYFASYIVLDKGETDLQYKQVLSEQEYQDAREKWGSAFRVGMGA
EAVQELLQNIDLEKEYHELKEELLGATGQKRARIVKRLEVVEAFRESGNKPEWMIMTVIP
VIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLELGAPDIIVRNEKRMLQEAV
DALIDNGRRGRPVTGPGNRALKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPELKI
YQCGLPKEMAIELFKPFVMKELVANGTAHNIKNAKKMVERLQTEVWDVLEDVIKEHPVML
NRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFL
LLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGAAGEGKIFKSVNEAILAYENQVIT
LHSKIKVRVTKTMPDGRTIMGTVESTLGRFLFNEIIPQDLGFVNREVEGNELLLEVDFHV
GKKQLKKILEKVINTHGASATAEVLDNVKAIGYKFSTRAAMTVSISDMTVPPQKPEMIKQ
AQDTVDRITRNFKRGLITEEERYKEVVETWKATDDALTEALLSGLDKYNNIFMMADSGAR
GSDKQIKQLAGMRGLMADTTGRTIELPIKSNFREGLDVLEYFMSAHGARKGLSDTALRTA
DSGYLTRRLVDVSQELSIREVDCVPKGAEIPGMYVHAFMDGNEEIESLEERITGRYSCET
ICDKDGNVIVKANHMITPKRAAAIVTKGVDKDGKEIKKVKIRTILTCKSHLGICAKCYGA
NMATGEPVQIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKP
KGLAIITEFAGTATIHDTKKKREIIVTNNETGESKAYLIPYGSRIKIMDGAELGAGDELT
EGSVNPHDILKIKGLRAVQDYMIQEVQRVYRLQGVDINDKHIEVIVRQMLKKIRIEENGD
SNFLPGTMVDALEFEDTNQKLIEEGKEPATGEQVMLGITKAALATNSFLSAASFQETTKV
LTEAAIKGKVDPLIGLKENVIIGKLIPVGTGMSKYRNIKLNTDAMIAAKKEEEERLRKEE
EEALKEAEAAEAAAKAKEESAEAEENLEAGESEFADINMEEAADEDYEAEMAEESEGTTE
E
NT seq 3786 nt   +upstreamnt  +downstreamnt
atgacaggaactaatagtgaagccacatatcagccaatgacctttgacgccattaaaatt
ggactggcatcacctgaaaaaatcttggaatggtcaaggggagaagtgacaaaaccggaa
accatcaactacagaacactgaagccggaacgcgacgggcttttctgtgagagaattttc
ggacctagcaaagactgggaatgtcattgtggaaaatataaaaagatccgctataaaggt
gtgatctgtgaccgatgcggagttgaagtgacaaaagcgagtgtgcgccgtgaacgtatg
gggcacatcgcgcttgccgctccggtttcccatatctggtatttcaaggggataccgagc
cgtatgggtctgatcctcgatctttctccgagaacactggagaaagtgctgtactttgct
tcttatattgtgctggataaaggagagacagatctgcagtacaaacaggtactctccgaa
caggagtatcaggacgcaagggaaaaatggggaagtgcattccgcgtgggaatgggagca
gaagcagtacaggaacttctgcagaatatcgaccttgaaaaagaatatcatgagctgaaa
gaagagcttttaggagctacaggccagaaacgcgcaaggatcgtaaaacgtcttgaagta
gtggaggcgttccgtgaatccggaaataagccggaatggatgatcatgacagtgatcccg
gtcatcccgccggatctgcgtccgatggtacagcttgacggcggacgttttgcaacgtct
gacttaaatgacctgtacagaagaatcatcaacagaaacaaccgtctgagaagactcctg
gaattgggagctccggacattatcgtaagaaacgaaaagagaatgcttcaggaagcggtt
gacgccctgatcgacaatggacgtcgcggacgtccggtaacaggacctggaaaccgtgcg
ctgaaatctctttccgatatgctgaaaggaaaatccggacgtttccgtcagaacctgctc
ggaaaacgtgtagactattccggacgttccgttatcgtcgtaggaccggaactgaagatc
tatcagtgcggtctgccgaaagaaatggcgatcgagctgttcaagccgttcgtaatgaaa
gaactggttgcaaacggtacggcacacaatatcaaaaatgcaaagaagatggtagaaaga
ctgcagacagaagtgtgggatgtgctggaagatgtcatcaaagaacatccggttatgctg
aaccgtgcccctacactgcacagacttggtattcaggctttcgaaccgatccttgtggaa
ggtaaggcgatcaaacttcatccgctcgtatgtacggctttcaacgccgacttcgacggg
gaccagatggctgtacatctgccgctttctgtggaagcgcaggcagaatgccgcttcctc
cttctctccccgaacaaccttctgaaaccgtcagatggtggaccggtagccgttccttca
caggacatggtacttggtatttactatctgactcaggaaagaccgggagcggcaggggaa
ggaaagatctttaagagcgtcaacgaagccatccttgcgtacgaaaatcaggttatcacg
ctgcattccaagattaaagtccgcgtgacaaaaacaatgccggatggaagaacaatcatg
ggtactgtggaatccacattgggacgtttcctcttcaatgagatcatcccgcaggatctt
ggatttgtaaaccgtgaagtggaaggaaacgaacttcttctggaagtagatttccatgta
ggaaagaaacagcttaagaaaatccttgaaaaagtaatcaatacacatggggcttccgct
actgcagaagtgcttgacaatgtaaaagcgatcggatacaaattctccacaagagccgct
atgacagtatctatttccgatatgacggtgccgccgcagaagccggaaatgatcaagcag
gcacaggatacagtagataggatcacaagaaacttcaagcgtggtcttatcacagaagaa
gaacgttacaaagaagtcgtagagacatggaaggcgacagacgatgccctgacagaggct
ctgctttccggacttgacaaatataataacattttcatgatggctgactccggagcccgt
ggttccgataaacagatcaaacagcttgccggaatgcgcggacttatggctgatacgaca
ggacgtacgatcgagctccctattaagtctaacttccgtgaaggtcttgacgttttggaa
tacttcatgtctgcacacggagcacgtaaaggtctttccgatacggctcttcgtacagcg
gactccggttacctcacaagacgtcttgtcgatgtatctcaggaattgagtatccgtgaa
gtggactgtgtgccgaagggcgcagaaattccgggtatgtacgtgcatgcatttatggac
ggaaacgaagagatcgaaagtcttgaagaacgtattacaggacgttattcctgtgagacg
atctgcgacaaagacggcaatgtcatcgtgaaagcaaaccatatgatcacgccaaaacgt
gcggctgcgatcgtgacaaaaggtgtggataaagacggcaaagagatcaagaaggttaaa
atccgtacgatccttacatgtaaatcccatctgggtatctgtgcaaaatgttacggtgca
aacatggctacaggagaaccggtacagatcggagaggcagtcggaatcattgctgctcag
tctatcggggaacctggtacacagcttacaatgcgtacgttccacacaggtggtgtggcc
ggcgatgatatcacacagggtcttcctcgtgtcgaagaactttttgaggcaagaaaaccg
aaaggtcttgctatcatcactgagtttgcaggaactgcaacaatccacgacacgaagaag
aagagagagatcattgttacaaacaatgagacaggagaatcaaaagcatacctcattccg
tacggatcaagaatcaagatcatggacggagcagagcttggtgccggggatgaacttaca
gaaggtagtgtcaacccgcatgatatcctgaagatcaaaggactccgtgctgtacaggat
tacatgatccaggaagtgcagagggtataccgtctccagggtgtagatatcaacgataag
catatcgaagttatcgttcgccagatgctgaagaaaatccgcatcgaggaaaatggagat
tccaatttcctcccgggcacgatggtagatgcgcttgagtttgaagatacaaaccagaaa
cttattgaagaaggaaaagagccggctacaggagagcaggtaatgcttggtatcacgaag
gctgcgctcgcgacgaattccttcctgtcagcagcctccttccaggagacaacaaaagtt
ctgacagaggcagctatcaaaggaaaagtcgatccgctgatcggtctgaaagaaaacgta
atcatcggtaaactgattccggttggtacaggtatgagcaaataccgcaacatcaagctg
aatacagatgccatgatcgctgcaaagaaagaagaggaagagcgtcttcgcaaagaagag
gaagaagccctcaaagaagcagaagcagcggaagcggctgcaaaggcaaaagaagagtct
gcagaagctgaggaaaatctggaagcaggagagtctgaatttgcagatatcaacatggaa
gaagctgccgatgaagactacgaagctgaaatggcagaagaatcagaggggacaacagaa
gaataa

DBGET integrated database retrieval system