Streptococcus canis: NCTC12191_00596
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Entry
NCTC12191_00596 CDS
T07143
Symbol
mfd_1
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scai
Streptococcus canis
Pathway
scai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC12191_00596 (mfd_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scai03400
]
NCTC12191_00596 (mfd_1)
Enzymes [BR:
scai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC12191_00596 (mfd_1)
DNA repair and recombination proteins [BR:
scai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC12191_00596 (mfd_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
VEE24420
LinkDB
All DBs
Position
1:complement(569131..572631)
Genome browser
AA seq
1166 aa
AA seq
DB search
MNILELVSQNKKIQAWHSELTTLGRQLVMGLSGSSKAIAMASAYLDYQEKLVIVTSTQNE
VEKLSSDLSELLGEELVFQFFSDDVAAAEFIFASMDKTLSRIEALQFLLDPKTRGILLVS
LSGLRTLLPNPKVFERSQVSLKVGQEYDSDTLTKQLITIGYQKVSQVISPGEFSRRGDIL
DIYEITQELPYRLEFFGDDIDGIRKFNPETQTSFEQVEELLVYPASDLIFEVSDFQRGIE
HLEEALKTAKTEKKAYLEDLLAVSKDGFKHSDIRKFQSLFYEKEWTLLDYIPKGTPLFFD
DFQKLVDKNARFDLEVANLLTEDLQQGKALSNLHYFADNYRDFRHYKPATFFSNFHKGLG
NIKFDQLYQLTQYAMQEFFNQFPLLIDEIKRYQKNQATVIVQVESQQAYERLQKSFQDYG
FHLPLVSADQIVSRESQMMIGTISSGFYFADEKLALITEHEIYHKKIKRRLRRTNISNAE
RLKDYNELAAGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSDRISLPVDQISSL
SKYVSADGKEPKINKLNDGRFQKTKKKVAKQVEDIADDLLKLYAERSQQKGFSFSPDDEL
QRAFDDDFAFVETEDQIRSIKEIKADMESTQPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAVLVPTTVLAQQHYENFKARFENYPVEIDVLSRFRSKKEQAETLERVRKGQIDIIIG
THRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGGQVFYVYNKVDTIDKKVADL
KELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEQAIATKQGKTTIRQKGNAEINLQIDAYLP
ADYIADEHQKIDIYKRIREMESKEDYLNLQDEIMDRFGEYPDQVAYLLEIGLLKYYMDNA
FAELLERKNNQVTVRFENTSLHYFLTQDYFEALSKTHLKAKISEYHGKIDIVFDVRHQKD
YTILEELMLFGESLSEIKFRKAASSS
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaatattttagaattagttagtcagaacaagaaaatccaagcttggcattccgagttg
actaccttaggaaggcagttagtaatgggactgtcaggttcaagtaaagcaatagctatg
gcgtcagcttacttggattatcaagaaaaactagttattgtcacttcaacacaaaatgag
gttgaaaaattatctagtgacttatccgagctacttggtgaagaacttgtttttcaattc
ttttcggatgacgtagcagctgcggaatttatttttgcttcaatggataagacattgtca
aggatagaagctctgcaatttttattagatcctaagactagaggaattttactggttagt
ctgtcagggttaagaaccttattacctaatcccaaggtttttgaaagaagccaagtaagc
cttaaggtgggacaagaatatgatagtgatactctgaccaaacagcttattactattggt
tatcaaaaagtgtcacaagttattagccctggagaatttagtcgccgaggtgatattctt
gatatttatgagataacgcaagaacttccttatcgattggaattttttggtgatgatatt
gatggtatcagaaaatttaatccagaaactcaaacgtcatttgaacaagtagaagagtta
ttggtttacccagctagtgatcttatttttgaagttagtgattttcagagaggaattgaa
caccttgaggaggctctaaagacggcaaaaactgagaaaaaagcctatttagaagattta
ttagctgtttcaaaagatgggtttaagcactcagacattcgcaaatttcaatctctgttt
tacgaaaaagaatggaccttattagattatatcccaaaaggaactcctctctttttcgat
gattttcaaaaattagtggataaaaacgcaagatttgatttagaagttgctaacctcttg
acagaagatttacagcagggtaaagctctctctaatcttcactattttgcggataactat
cgcgattttcgtcattataagccagctactttcttttcaaactttcacaagggtctcggt
aatattaaatttgatcagttgtatcaactgacccaatatgccatgcaggaatttttcaat
caatttccgttgctaattgatgagattaaacggtatcaaaaaaatcaagctacagttatt
gttcaagttgagtctcagcaggcttatgaacgccttcaaaaatcctttcaagactatggc
ttccaccttcctttagtgagtgctgatcagattgtttcacgtgaatcacagatgatgatt
gggactatttctagtggcttttattttgcagatgagaaattagctctaataacagagcat
gaaatctatcataaaaaaatcaaacgccgtcttagacgtactaatatcagtaatgcggag
cgtttaaaggattataatgaattggctgcaggcgattatgtggttcataatgtccatggt
attggccgatttcttggaatcgaaacgattcagattcagggaattcatagagattatgtg
accattcagtatcaaaactctgatcgcatttctttaccagttgatcaaattagcagctta
tcaaaatatgtttctgctgatggaaaagaacctaaaattaataaactcaatgatggtcgt
tttcaaaagacaaagaaaaaggtcgctaagcaagtagaagatattgctgatgaccttcta
aaattatatgctgaaagaagtcagcaaaaaggattttcattttcaccagacgatgagttg
caacgagcttttgatgatgattttgcttttgtggaaacggaggatcaaattaggtccatt
aaagaaattaaagctgatatggaaagcacacagccaatggatcgtttgctggtaggcgat
gttggatttggtaaaacagaagtagctatgagagcagcctttaaagcggtgaatgaccac
aaacaagtagctgtcttagttccaaccacagtcttggcccagcagcactatgaaaatttc
aaggctcgctttgaaaattaccctgtcgaaatagatgtcctaagtcgtttccgtagtaaa
aaagagcaggctgaaacgctagaacgtgttcgaaaaggtcaaattgatattattattgga
acccatagactcttatcaaaagatgtggttttctcagatttaggattgattgtgattgac
gaggaacaacgatttggcgttaaacataaagaaacgctaaaagaattgaaaaccaaggtt
gatgtcttgacattgacagcgactccgattcctcgaaccttacacatgtcaatgcttgga
attagagatttatctgtcattgaaacaccaccaaccaatcgttaccctgttcaaacctat
gttttggaaaataatccaggtctcgttagagaagctattattcgtgaaatggatcgtggt
ggacaagttttctacgtttacaataaagttgatacgattgacaagaaggttgcagatcta
aaagaattagttccggaagcttctatcggttttgttcatgggcaaatgagtgaaattcaa
ctagaaaatactctaatagactttattaatggggattatgatgtgcttgttgcaacgaca
attattgaaacaggggttgatatttctaatgtaaatactttgtttattgaaaatgctgat
cacatgggactgtcaaccttgtatcaacttagaggtcgtgtaggaagaagtaatcgtatt
gcctatgcctaccttatgtaccgtccagataaggttctaacagaggtgtcagaaaaacgt
ttagaagcaatcaaaggctttaccgagctaggttcaggatttaagattgctatgcgagat
ctatctatccgaggagcaggtaatattttaggggcatctcagagtggttttattgattct
gtcggatttgagatgtattctcaattattggaacaggctattgcaactaagcaaggaaaa
acgactattcgtcaaaaaggtaatgctgaaatcaatcttcagattgatgcctatttgcca
gctgattacattgcagatgagcaccaaaaaattgatatttacaaacgtattcgagaaatg
gaatctaaggaagattacctcaacctccaagatgaaataatggaccggtttggtgagtat
cctgatcaagtggcttatttgctggaaattggtctgttaaaatattacatggacaatgct
tttgcagaattacttgaacgaaaaaataatcaagtaactgttaggtttgaaaatacttct
ttacattatttcttgacacaagattattttgaagccttatcaaaaacacatttaaaagca
aaaatcagtgaatatcatggtaaaattgatattgtttttgatgttcgtcatcaaaaagat
tacacgattttagaagaattgatgttatttggagaaagccttagtgagattaaatttaga
aaagcagcctcatcttcttaa
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