Streptococcus canis: NCTC12191_01443
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Entry
NCTC12191_01443 CDS
T07143
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scai
Streptococcus canis
Pathway
scai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12191_01443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scai03019
]
NCTC12191_01443
Messenger RNA biogenesis [BR:
scai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12191_01443
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
ODP
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
VEE25241
LinkDB
All DBs
Position
1:1429856..1431517
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AA seq
553 aa
AA seq
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MTDIKMIALGGVREYGKNFYLVEINDSMFILDAGLKYPENEQLGVDLVIPNLDYVIEHKD
KVQGIFLSHGHADAIGALPYLLAEVSAPVFGSELTIELAKLFVKGNNNTKKFNNFHVVDS
ETEIEFKDGLVSFFKTTHSIPESMGVVIGTDKGNIVYTGDFKFDQAAREGYQTDLLRLAE
IGKEGVLALLSDSANATSNDQIASESEVGEEMDSVIADADGRVIVAAVASNLVRIQQVFD
SAVAYGRRVVLTGTDVENIIRTALRLKKLMITDERLLIKPRDMAKFEDHELIILEAGRMG
EPINSLQKMAAGRHRYVQIKEGDLVYIVTTPSTAKEAMVARVENLIYKAGGSVKLITQNL
RVSGHANGRGLQLLINLLKPQYLFPVQGEYRDLAAHAKLAEEVGIFPENIHILKRGDIMV
LNDEGFLHEGSVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVSKKEKRIISK
AKVNTRGFVYVKKSRDILRESAELVNKTVENYLQKDTFDWGELKGNVRDDLSKFLFEQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattaaaatgattgccttggggggtgtccgtgaatacggaaaaaacttttac
ttggtagaaattaacgattctatgtttattttagatgctggactcaagtatcctgaaaat
gaacaacttggggtagatttagttatcccaaatttagactatgtgattgaacataaagac
aaggtgcaagggattttcctgagccatggccatgctgacgctattggagcgctaccttat
ttattggcagaagtatcggctcctgtctttggatctgaattaaccatcgagttggcaaaa
ttatttgtcaaagggaataacaacactaagaaattcaacaatttccatgtggtggatagt
gaaacagaaatcgaatttaaagacggcttggtatctttctttaaaacgacacattctatt
ccagaaagtatgggagttgtgattggtacagacaagggaaatattgtttacacaggagat
ttcaagtttgatcaagccgcacgtgaaggctatcagacagatttgctacgtctagctgag
attgggaaagaaggggttttagccctcttatcagattcagctaatgcgacaagcaacgac
caaattgccagtgaatctgaagtcggtgaggaaatggacagtgtcattgctgatgctgat
ggccgtgtcattgtggccgcagtagcttcaaatctagtccgtatccaacaggtctttgat
tccgctgttgcttatggtcgtcgcgttgtgttaaccggaacagatgttgaaaatattata
cgaactgccttacgtttgaaaaaactaatgattacagatgagcgcctgttgattaaacct
agggacatggccaagtttgaagatcacgaattaatcattcttgaagccggccgtatgggt
gagccgattaatagtctgcaaaaaatggcagccggccgccatcgttatgtccaaatcaaa
gaaggagatctggtttatattgtgaccactccaagtacggctaaagaagccatggtcgca
cgagttgaaaatttgatttacaaggctggtggttctgttaaattaatcacacagaatttg
cgcgtgtcaggccatgctaacgggcgtggattacagctcttaatcaatttgttgaaacct
cagtatcttttcccagttcaaggggaatatcgggatttggctgcccatgctaagttagca
gaggaggttggtattttcccagagaacattcatattcttaaacgcggcgatattatggta
ctcaatgacgagggctttcttcatgaaggtagtgtacccgccggtgatgtcatgattgat
ggtaatgctatcggtgacgtgggtaacattgtcttacgagaccgtaaagtcttgtcagaa
gatggtatttttatcgttgccatcacggtttctaaaaaagaaaaacgcattatctcaaaa
gcgaaggtgaatacccgtggatttgtttatgttaagaaaagccgtgacattttaagagaa
agtgcagaactggttaacaaaacagttgagaattacctgcaaaaagatacgtttgactgg
ggcgaattaaaagggaatgtcagagatgacttgtctaaattcttatttgaacaaaccaaa
cgacgcccagctattctaccggtagtcatggaagttcgctaa
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