Streptomyces camelliae: O1G22_24895
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Entry
O1G22_24895 CDS
T10340
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scaj Streptomyces camelliae
Pathway
scaj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O1G22_24895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scaj03400
]
O1G22_24895 (mfd)
Enzymes [BR:
scaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O1G22_24895 (mfd)
DNA repair and recombination proteins [BR:
scaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O1G22_24895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WBO65820
LinkDB
All DBs
Position
5430100..5433633
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEATKAAGDGNRMHIDLVGPPAARPFAVAALARETGRPVLAVTA
TGREAEDLAAALRSLLPPEGVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLKTGQTADLNDVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADIRDRARELDMM
WWSVSPFAADTTGDADTLKLGMHAPESYRGDTARALADTKGWLADGWRAVFVTEGHGPAA
RTVEVLGGEGIAARLDADLVEPTPSVVHVSCGSIEYGFVDPGLKLAVLTETDLSGQRTAG
REGARMPARRRKTIDPLSLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVNVRALSRFQTDTEAKA
VLEGLKDGAVDVVIGTHRLFSSETRFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKRFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEETPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRVKRLYPGTVIKPAV
HQILVPRPKTAKVGGKPLVGRELLGWVGEFLASILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaagcgacc
aaggcggccggggacggcaaccgcatgcacatcgacctggtcggccccccggcggcccgc
cccttcgcggtcgccgccctcgcccgcgagaccggccgccccgtgctcgcggtgaccgcg
accggccgcgaggccgaggacctggccgcggccctgcgctccctgctgccccccgagggc
gtggcggagtacccctcctgggagaccctcccgcacgagcggctcagcccgcgcagcgac
accgtcggccggcgcctcgccgtcctgcgccgcctcgctcacccgagccccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcccccgtgcgctccgtgctccaaccgcaggtc
aagggcctcggcgacctggaaccggtgtccctgaagaccgggcagacggctgacctgaac
gacgtcgtggaggccctcgcggccgccgcctacgcgcgcgtggagctcgtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccg
ctgcgtgtggagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgagcacggcctgtgggccccgccgtgccgcgagctgctg
ctcaccgacgacgtccgcgcacgcgcgcgtgccctcgccgaggagcaccctgagctgggc
gaactcctgaacaagatcgccgagggcatcgcggtcgagggcatggagtccctcgccccg
gtcctggtcgacgacatggagctgctgctcgacgtcctgcccaagggcgccatggccgtc
gtctgcgacccggagcgggtccgcacgcgcgcggccgacctcgtggccacctcccaggag
ttcctccaggcctcctgggcggccaccgccggcggcggcgaggccccgatcgacgtcggc
gcggcctccctgtggtccatcgccgacatccgcgaccgcgcgcgcgagctggacatgatg
tggtggtccgtctcgccgttcgccgctgacacgacgggcgacgcggacaccctcaagctc
ggcatgcacgcgcccgagagctaccgcggcgacaccgcgcgggcgctcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtgttcgtcaccgagggccatggcccggccgcc
cgcacggtggaggtgctcggcggcgagggcatcgccgcccgcctcgacgccgacctggtc
gaaccgaccccctcggtggtgcacgtctcctgcggctcgatcgagtacggcttcgtggac
ccgggtctgaagctcgccgtgctcaccgagaccgacctgtccggccagcgcaccgcgggc
cgcgagggcgcgcggatgccggcccgccgccgcaagaccatcgacccgctcagcctggag
tccggcgactacatcgtccatgaacagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgtgagtacctggtcgtggagtacgcgcccgccaagcgc
ggccagcccggcgaccggctgtacatcccgaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcacccaccctgcaccgcctgggcggcgcggactggacgaagaccaag
gcacgcgcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctctacagcgcg
cgcatggcggcccccggacacaccttcggcccggacaccccctggcagcgcgagctggag
gacgccttcccgtacgcggagaccccggaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtgcgggccgccttcaaggccgtacaggacggcaagcaggtcgccgtc
ctcgtgccgacgacgctgctggtgcagcagcacttcgggacgttctccgagcggtacggc
cagttcccggtcaacgtcagggccctgtcccgcttccagaccgacaccgaggcgaaggcc
gtcctggagggcctgaaggacggcgcggtggacgtcgtcattggtacccaccggctgttc
tcctccgagaccaggttcaaggacctcggcctggtcatcgtggacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgaccatg
tcggccacgcccatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccacgcccccggaggagcgccacccggtactcaccttcgtcggaccgtacgag
gagcggcagatcggcgccgccatccggcgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtccatcgacagagccgcggcccgactccgcgagatcgtcccc
gaggcacgcatcgccaccgcgcacggccagatgtcggagcaggcgctggagcaggtcgtc
gtcgacttctgggagaagaggttcgacgtgctcgtctcgaccacgatcgtcgagtccggc
atcgacatctccaacgccaacacgctcatcgtggagcgtggtgacaccttcgggctgtcc
cagctgcaccagctgcgcggccgcgtcggccgagggcgtgagcgcggatacgcgtacttc
ctgtacccgccggagaagccgctcaccgagaccgcgcacgagcggctcgccaccatcgcc
cagcacaccgagatgggcgccggcatgtacgtggcgatgaaggacctggagatccgcggc
gccggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggcggtcgccgactaccggcgacagctggagaccggcgag
atcgaggaggagacgccgctcgaagtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcccccggcgagcgcctgcgtctgcaggcctaccgcgccatcgcctccgcc
aactccgaggaggacatcaaggccgtccgcgaggaactcaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtggccgggctgcggatgctcgcgcgcgcgtgc
ggcgtcggcgagatcgtcctgcagggcaccaacatccgcttcgcgccggtcgagttgcgc
gagtcgcaggagctgcgggtcaagcgcctgtacccgggcacggtcatcaagccggccgtg
caccagatcctggtcccgcgcccgaagaccgcgaaggtcggcggcaagccgctggtcggc
cgcgaactgctgggctgggtcggcgagttcctcgcctcgatcctggggtcgtag
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