Streptomyces californicus: I6J39_10230
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Entry
I6J39_10230 CDS
T07611
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
scal
Streptomyces californicus
Pathway
scal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J39_10230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scal03019
]
I6J39_10230
03009 Ribosome biogenesis [BR:
scal03009
]
I6J39_10230
Enzymes [BR:
scal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I6J39_10230
Messenger RNA biogenesis [BR:
scal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6J39_10230
Ribosome biogenesis [BR:
scal03009
]
Prokaryotic type
rRNA processing factors
I6J39_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QRV27652
LinkDB
All DBs
Position
complement(2296209..2300504)
Genome browser
AA seq
1431 aa
AA seq
DB search
MPQPNEPGTTGNNEENTPGDKLPPRRRRRAASRPAGPPGGAAPAAEDVTPAIPADASAAP
AVDDTPGETAAEAAPPARTRRRAVRKSTAPAGAPPQAETAEPGPAAETAPVAEAPAQPVA
DEEPAAPAPRARRRAVRKATAPAGSPEAAEVVEAPVEAAAEPETEPEEEAVAAVETPEEA
PAPRRRRASRKATSPAGAPQPAEEAVVVVEPAADAPAEEPAAAAEPAAPRGRTRRRASAP
AGAPQAAASVSEPEQVRAAEPAAPAAVEAETAEEAPAPRGRRRASRKASAPAGSPQPAEA
AGAVGSADVADSADVAEEPVESGESLPAAVAEELAAETDEVEEAAPRGRRRRRATAAAGS
PEFTAKTEEPTRRSRRATRPAVAVFQAPVFAEPMFQTPETAAAAAAAAGSASPYDEADEV
EEQTGSEQSAAPAEAAPQGGSRRRRRRRGESDAAEQAAPVGTPAAEAPEAEAEAEADEHD
DDADEYGDRPSRRRRRGGRRRRRGEAHDTDDENTDDAPARTGAEETRAEDEQDGGRGQAQ
ETADESDEDDDASASGSSSSSRRRRRRRRRSGDAAADADHGTSDDPERTVVKVREPRKKE
EREPGTGFDEVQSIKGSTRMEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVR
QNGERTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL
YAGEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVP
EGSMTGISRKLPDTERSRLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWAD
IQKKAKGTSSSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPD
LTERLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTG
QGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRD
RTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSPGGGGGGKK
SKKRRGGAGQDHDHGHDHGSQDHGSQDHGSQDHGSQDHASAETSETEAVETEAELAAEVA
APVAVEPAVREDDEFYGSPAEAEAAATRGRGRRRASRKASAPAGAPKAEAPAAEPTPEPV
VEAPAAETPVAEAPAAEVPEAPAEAAPQGRTRRRATRKATAPAGAPKQAEAAEPVQPAEP
AADPVAVEDPVVEPAAAETPAVEAPAEPAPEAPVAAPPRARRRVTRKVTAPAGSPTGGDD
AAVVVVDTASEAKAPEADDRAPEGTPESGVTDSESAGAAPAKKTARKTAAKKAPAKKAAA
KKTAAKKTAAKKTTAKTAAKKATKKTVAAEQQSSPSVNASTGSPEGEASAG
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagccgaacgaacccggcacgaccgggaacaacgaagagaacacccccggcgac
aagctgccgccgcgccgtcggcgccgcgccgcctcccgccccgccggtccgcccggtggc
gccgcgcccgccgccgaggacgtcacgccggccataccggctgacgcgtccgccgctccc
gcagtggacgacacgcccggggagacggccgccgaggccgcgccccccgcccgcacccgc
cgccgcgccgtgcgcaagtccaccgcgcccgccggcgccccgccgcaggcggagaccgcc
gagcccgggcccgccgccgagaccgccccggtcgccgaggctcccgcgcagcccgtcgcc
gacgaggagccggccgcccccgcgccgcgcgcccgccgccgcgcggtccgcaaggcgacg
gccccggccggttcgccggaggccgccgaggtcgtcgaggcaccggtggaggccgccgcc
gagcccgagaccgagcccgaggaagaggccgtggccgccgtggagaccccggaggaggcc
ccggcgccccgccgccgtcgcgcctcccgcaaggccacctcgccggcaggcgccccgcag
cccgccgaggaggccgtcgtcgtggtcgagcccgccgccgatgctcctgccgaggagccc
gccgccgccgcggagcccgccgctccccgcggccgcacccgccgccgtgcctccgctccg
gccggcgccccgcaggccgccgcgtccgtgagcgagccggagcaggtccgggccgccgaa
cccgccgccccggccgccgtcgaggccgagaccgccgaggaggccccggccccgcgcggc
cgtcgccgcgcctcccgcaaggcgtccgcgcccgccggttcgccgcagcccgccgaggct
gccggagccgttgggtccgccgacgtcgccgactccgccgacgtcgcggaggagcccgtc
gagtccggcgagagcctgcccgccgccgtcgccgaggagctggccgccgagaccgacgag
gtcgaggaggcggccccgcgcggacggcgccgccgccgggccaccgccgccgcgggcagc
cccgagttcaccgcgaagaccgaggagccgacgcgccggagccgccgtgcgacgcgcccc
gccgtcgccgtcttccaggccccggtcttcgccgagcccatgttccagacccccgagacg
gccgccgccgcggctgccgccgccggctccgcctccccgtacgacgaggccgacgaggtc
gaggagcagaccggctccgagcagagcgccgcgcccgccgaggccgcgccgcagggcggc
tcgcgccgtcgccgtcgccgccgcggcgagtccgacgccgccgagcaggccgccccggtg
gggacgcccgcggccgaggcccccgaggccgaggcggaggcggaggccgacgagcacgac
gacgacgccgacgagtacggcgaccgcccctcgcgccgccgccgccgaggtggccgccgc
cgccgtcgcggtgaggcccacgacacggacgacgagaacaccgacgacgcccccgcccgc
accggcgccgaggagacccgcgccgaggacgagcaggacggcggccggggccaggcgcag
gagacggccgacgagagcgacgaggacgacgacgcctcggcctccggttcgagcagcagc
tcccgccgtcgccgccgtcgccgccgccgcagcggtgacgcggccgccgacgcggaccac
ggcacctccgacgacccggagcgtacggtcgtcaaggtccgcgagccccgcaagaaggag
gagcgcgagccgggcaccggcttcgacgaggtccagtccatcaagggctcgacccggatg
gaggccaagaagcagcgccgccgcgagggccgcgagcagggccgccgccgggtcccgatc
atcaccgaggccgagttcctcgcccgccgcgaggccgtcgagcgcgtgatggtcgtccgc
cagaacggcgagcgcacccagatcggcgtcctcgaggacaacgtgctcgtcgagcactac
gtcaacaaggagcagtccaccagctacgtcggcaacgtctacctgggcaaggtccagaac
gtgctgccgtccatggaggccgccttcgtcgacatcggcaagggccgcaacgccgtcctg
tacgccggtgaggtcaacttcgaggcgctcggcatggctcacgggccgcgccgcatcgag
accgcgctcaagtccggccagtccgtcctggtccaggtgaccaaggatccgatcggccac
aagggcgcgcggctgaccagccaggtctcgctgcccggccgctacctggtctacgtgccc
gagggctccatgaccgggatcagccgcaagctgcccgacaccgagcgctcccgcctgaag
accatcctcaagaagatcgttcccgaggacgcgggcgtcatcgtgcgcaccgccgccgag
ggcgcgagcgaggacgagctgcgccgcgacgtcgagcgcctccagcagcagtgggcggac
atccagaagaaggccaagggcaccagctcctcgaacgccccgacgctgctctacggcgag
ccggacatgaccgtccgggtggtccgcgacatcttcaacgaggacttctccaaggtcatc
gtgagcggtgacgaggcgtgggagaccatccacggatacgtctcgcacgtcgcgcccgac
ctcaccgagcggctctcccgctggacctccgaggtcgacgtcttcgcgacgtaccgcatc
gacgagcagctgatgaaggcgctggaccgcaaggtctacctgccgagcggcggttcgctg
gtgatcgacaagaccgaggcgatggtcgtcgtcgacgtcaacaccggcaagttcaccggc
cagggcggcaacctggaggagaccgtcaccaggaacaacctggaggcggccgaggagatc
gtgcgccagctgcggctgcgcgacctcggcggcatcgtcgtcgtcgacttcatcgacatg
gtgctggagtccaaccgggacctggtcctgcggcggctcctggagtgcctgggccgtgac
cgcaccaagcaccaggtggccgaggtcacctcgctcggcctggtccagatgacccgcaag
cgggtgggccagggcctgctggagtccttctccgagacctgcgtgcactgcaacgggcgc
ggtgtcatcgtccacatggagcagccgacgtccccgggcggcggtggcggcggcaagaag
tccaagaagcgccgcggtggcgcgggccaggaccacgaccacggtcacgaccacggctcc
caggaccacggctcccaggaccacggctcccaggaccacggctcccaggaccacgcctcc
gccgagacctcggagaccgaggccgtggagaccgaggccgaactggccgccgaggtcgcc
gccccggtggccgtggagcccgcggtccgcgaggacgacgagttctacggcagccccgcc
gaggcggaggcggccgccacgcgcggccgtggccgccgccgcgcctcgcgcaaggcgtcg
gctccggccggcgccccgaaggccgaggcccctgccgccgaaccgacgcccgagccggtg
gtcgaggccccggcggccgagaccccggtcgcggaggcccccgccgccgaggttccggag
gcgccggccgaggccgcgccccagggccgtacgcgccgccgggccacccgtaaggcgacc
gccccggcgggtgcgccgaagcaggccgaggcggcggagccggtacagccggccgagccc
gccgcggacccggtcgcggtggaggacccggtcgtggagccggccgccgcggagacgccg
gccgtcgaggccccggcggagcccgcacccgaggccccggtggccgcgccgccgcgtgcc
cgtcgccgggtgacgcgcaaggtcaccgctccggcgggttcgcccaccggcggggacgac
gcggcggtggtcgtggtcgacacggcgtccgaggcgaaggccccggaggcggacgaccgg
gccccggagggaaccccggagtccggagtgacggattccgaatccgcgggggccgcaccg
gcgaagaagacggcacgcaagaccgccgccaagaaggccccggccaagaaggcggcggcc
aagaagacggccgcgaagaagacggccgccaagaagacgacggcgaagaccgcggcgaag
aaggcgacgaagaagaccgtcgccgccgagcagcagtcgtcgccctcggtgaacgcctcc
accggttccccggagggtgaggcgtcggccggctga
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