Streptomyces californicus: I6J39_12985
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Entry
I6J39_12985 CDS
T07611
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scal
Streptomyces californicus
Pathway
scal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6J39_12985 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scal03400
]
I6J39_12985 (mfd)
Enzymes [BR:
scal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6J39_12985 (mfd)
DNA repair and recombination proteins [BR:
scal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6J39_12985 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QRV28123
LinkDB
All DBs
Position
complement(2991617..2995150)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDVVVTDPALAEAVKAAGDGHRAHVDLVGPPGARPFAVAALARQTGRTVLAVTA
TGREAEDLAAALRTLLPPDTVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPREDDP
ETGPVSVVVAPIRSVLQPQVKGLGELEPVSLESGQSADLGEVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKIADQRSLEVAAHGLWAPPCRELL
LTDQVRERAAVLAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAI
VCDPERVRTRAADLVATSQEFLQASWAASAGGGEAPIDVGAASLWGIADVRDRARELGMM
WWTVSPFAADAADHDDDTLQLSMHAPEAYRGDTARALADTKGWLADGWRTVYVTEGQGLA
SRTVEVLGGEGIAARLDADLTEITPSLVHVSCGAIDQGFVDPALKLAVLTETDLTGQRTA
TKDLGRMPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYS
ARMAAPGHAFGADTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYSQFPVNVRALSRFQSEAESK
ATLEGLKDGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAQMEGG
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATSEDDIRAVREELTDRYGPL
PEPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLKRLHPKALIKPAA
HQILVPRPTTGRIGGKPVIGRELLSWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgcacggtctgctggacgtcgtcgtcaccgacccggcgctcgccgaggcggtg
aaggccgccggggacgggcaccgggcccacgtcgacctggtgggcccgcccggcgcacgc
ccgttcgccgtcgccgcgctggcccggcagaccggccgtacggtgctggccgtcaccgcg
accgggcgggaggccgaggacctggccgccgccctgcgcaccctgctgccgccggacacg
gtcgccgagtacccctcctgggagacgctgccgcacgagcggctctcgccccgctccgac
accgtgggccgccgcctcgccgtgctgcgccgcctggcgcacccgcgcgaggacgacccg
gagaccggcccggtttcggtcgttgtcgcgccgatccgctccgtgctccagccgcaggtc
aaggggctcggcgagctggagccggtgtcgctggagagcgggcagagcgcggatctgggc
gaggtggtggaggcgctggcggccgccgcgtacgcccgggtggaactggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcacccc
cttcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaagatcgccgac
cagcggtccctggaggtcgccgcccacggtctgtgggccccgccctgccgcgagctgctg
ctcaccgaccaggtgcgggagcgggcggccgtcctcgccgaggagcacccggagctgggc
gagctgctggggaagatcgccgagggcatcgcggtcgagggcatggagtccctggccccc
gtcctggtcgacgacatggagctgctgctcgacgtcctgccgaagggcgcgatggcgatc
gtctgcgaccccgagcgggtgcggacgcgggcggccgacctggtcgccacgagccaggag
ttcctccaggcgtcgtgggcggcgagcgcgggcggcggcgaggctccgatcgacgtcggc
gcggcctcgctgtggggcatcgcggacgtccgggaccgggcccgcgagctgggcatgatg
tggtggacggtctcccccttcgcggccgacgccgccgaccacgacgacgacaccctccag
ctctccatgcacgcccccgaggcgtaccggggcgacaccgcccgcgccctggccgacacc
aagggctggctggccgacggctggcgcacggtgtacgtcacggagggccaggggctcgcc
tcccgtacggtcgaggtgctgggcggcgagggcatcgcggcccgcctcgacgcggacctg
accgagatcaccccgtccctggtccacgtctcctgcggcgcgatcgaccagggcttcgtg
gacccggcgctgaagctcgccgtgctgaccgagaccgacctgaccggccagcgcaccgcc
accaaggacctgggccggatgccggcccgccgcaggaagacgatcgacccgctgacgctg
gaggtcggcgactacatcgtccacgagcagcacggtgtcggccggtacgtggagatggtg
cagcgcacggtccagggcgcgacccgcgagtacctgctcgtcgagtacgcccccgccaag
cgcggccagcccggcgaccgcctgtacatcccgaccgaccagctggagcaggtcaccaag
tacgtcggcggcgaggccccgacgctgcaccggctcggcggcgcggactggacgaagacg
aagcagcgggcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctgtacagc
gcccggatggcggcccccggccacgcgttcggcgcggacaccccgtggcagcgggagctg
gaggacgccttcccgtacgcggagacgcccgaccagctctccaccatcgccgaggtcaag
gaggacatggagaagacggtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagacggagatcgcggtccgcgccgcgttcaaggcggttcaggacggcaagcaggtcgcg
gtcctcgtgcccacgaccctcctcgtccagcagcactacggcacgttcaccgagcgctac
tcccaattcccggtcaacgtgcgcgcgttgagccgcttccagtcggaggcggagtccaag
gcgacgctggaggggctcaaggacggctcggtcgacctggtcatcggcacgcaccgcctc
ttctcctccgagaccaagttcaaggacctcggcctggtcatcgtggacgaggagcagcgg
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtggacgtgctcacc
atgtccgccacccccattccccgtacgctcgaaatggcggtcaccggcatccgcgagatg
tccacgatcaccaccccgccggaggagcgccacccggtcctcaccttcgtcggcccgtac
gaggagaagcagatcggcgcggccgtccggcgtgaactgctgcgcgagggccaggtgttc
tacatccacaaccgggtggagtccatcgaccgggccgccgcccgcctgcgcgagatcgtc
ccggaggcgcgcatcgccacggcgcacggccagatgtccgaacaggccctggaacaggtg
gtggtggacttctgggagaagaagttcgacgtcctggtctccacgacgatcgtggagtcg
ggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctc
tcccaactccaccagctgcgcggccgggtgggccggggccgcgaccgcggctacgcctac
ttcctctacccgccggagaagccgctcaccgagaccgcccacgaacgcctggccacgatc
gcccagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacctcctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgac
ctgtacgtccgcatggtcggcgaggcggtcgcggactaccgggcccagatggagggcggc
gtcgaggaggagccgccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccg
cacgactacgcccccggcgagcggctgcgcctccaggcgtaccgcgcgatcgcctcggcc
acctcggaggacgacatccgcgcggtccgcgaggagctgaccgaccgctacggccccctg
cccgaaccggtcgagaacctcctgctggtcgccggcctgcgcatgctggcccgcgcctgc
ggcgtcggcgagatcgtcctccagggctccaacatccgcttcgcgccggtggagttgcgc
gagtcccaggaactccgcctcaagcgcctgcaccccaaggcgctcatcaagccggccgcc
caccagatcctggtcccgcgcccgacgacgggccgcatcggcggcaaaccggtcatcggc
cgcgaactgctgtcgtggacgggcgagttcctgacgacgatcctggggtcgtaa
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