Streptomyces californicus: I6J39_21615
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Entry
I6J39_21615 CDS
T07611
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
scal
Streptomyces californicus
Pathway
scal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6J39_21615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scal03021
]
I6J39_21615
03400 DNA repair and recombination proteins [BR:
scal03400
]
I6J39_21615
Enzymes [BR:
scal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6J39_21615
Transcription machinery [BR:
scal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6J39_21615
DNA repair and recombination proteins [BR:
scal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6J39_21615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
QRV29608
LinkDB
All DBs
Position
4887758..4888780
Genome browser
AA seq
340 aa
AA seq
DB search
MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHN
PDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTD
AALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAK
LAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcgctcagcgtccgtcgctgaccgaagaggtcgtcgacgagttccgctcccgg
ttcgtgatcgagccgctggagccgggcttcggttacaccctcggcaactccctccgccgc
accctcctctcctcgatccccggtgccgctgtcaccagcatccggatcgacggcgtcctg
cacgagttcaccaccgtgccgggcgtcaaggaggacgtcaccgacctcatcctcaacatc
aagcagctggtcgtctcctcggagcacgacgagccggtcgtgatgtacctgcgcaagcag
ggcccgggtctggtcaccgccgccgacatcgcgcccccggccggtgtcgaggtgcacaac
cccgacctcgttctcgccacgctcaacggcaagggcaagctggagatggagctgaccgtc
gagcgcggtcgcggctacgtctccgccgtccagaacaagcaggtcggccaggagatcggc
cgcatcccggtcgactccatctactcgccggtgctcaaggtcacgtacaaggtcgaggcg
acccgtgtcgagcagcgcaccgacttcgacaagctgatcgtcgacgtcgagaccaagcag
gccatgcgtccccgtgacgccatggcgtcggccggtaagaccctggtcgagctgttcggt
ctggcgcgcgagctcaacatcgacgccgagggcatcgacatgggcccgtccccgacggac
gccgctctcgccgccgatctggctctgccgatcgaggagctggagctcaccgtccgctcg
tacaactgcctcaagcgcgagggcatccactccgtgggtgagctcgtggcccgctccgag
gcggacctgctcgacatccgcaacttcggcgccaagtcgatcgacgaggtcaaggcgaag
ctggccggtatgggcctcgcgctcaaggactcgcctcccggcttcgacccgaccgccgcc
gccgacgccttcggcgcggatgacgacgcggacgccggtttcgtggagaccgagcagtac
tga
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