Streptomyces californicus: I6J39_28405
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Entry
I6J39_28405 CDS
T07611
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
scal
Streptomyces californicus
Brite
KEGG Orthology (KO) [BR:
scal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scal03016
]
I6J39_28405
Enzymes [BR:
scal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
I6J39_28405
Transfer RNA biogenesis [BR:
scal03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
I6J39_28405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
QRV30793
LinkDB
All DBs
Position
complement(6522320..6523594)
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AA seq
424 aa
AA seq
DB search
MTDAQETAADTSLRTTGGAPPDDVAPAPIPLLEPREGIPPVVTSDDALAEVVAAFAAGTG
PVAVDAERASGYRYGQRAYLVQLRREGAGSALVDPVGCPDLSGLGTALSGSEWILHAATQ
DLPCLRDIGMTPTSLFDTELAGRLAGFPRVGLGAMVENVLGYALEKGHSAVDWSTRPLPE
PWLRYAALDVELLIDLRDALEEELERQGKLEWAREEFDAIASAPPAPPRKDPWRRTSGMH
KVRRRRQMAVVRELWTARDQVAQRRDISPGKVLGDAAIVEAALALPANVQALTALPGFGH
RMGRRQLEQWQAAVERAKALPESALPQPGQQPAGPPPPRSWADKDPAAAARLSAARAAVS
ELAERLHMPQENLITPDTVRRICWEPPKNPTPGAVEDTLAGYGARNWQIQQVAPLLVRAL
AASA
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccaagagaccgcagcagacacttcactgcgaaccaccgggggcgctccc
ccggacgacgtcgccccggcgccgatccccttgctcgaaccacgcgagggcatccccccg
gtggtgacctccgacgacgccctggccgaggtggtcgcggccttcgccgccggcaccggc
ccggtggccgtcgacgccgaacgcgcctccgggtaccgctacggccagcgcgcctatctc
gtccagctgcgccgcgagggcgcgggcagcgccctggtcgacccggtcggctgccccgac
ctctccggtctcggcaccgcgctgagcggctccgaatggattctgcacgccgcgacccag
gacctgccctgcctgcgggacataggcatgacccccacctcgctcttcgacaccgagctg
gccgggcggctcgcggggttcccgcgcgtcggcctcggcgcgatggtggagaacgtcctc
gggtacgccctggagaagggccactccgccgtcgactggtccacccgcccgctgcccgag
ccctggctgcgctacgccgcgctcgacgtggagctgctgatcgacctgcgtgacgcgctg
gaggaggagctggagcggcagggcaagctggagtgggcccgcgaggagttcgacgcgatc
gcctccgcgccgcccgccccgccgcgcaaggacccctggcgccgcacgtcgggcatgcac
aaggtgcgccgccgccgccagatggccgtcgtccgcgagctgtggaccgcccgcgaccag
gtggcccagcgccgcgacatctcccccggcaaggtcctcggcgacgccgcgatcgtcgag
gcagcgctcgccctgccggccaacgtccaggcgctgaccgcgctgcccggattcggccac
cgcatggggcgccgtcagctggagcagtggcaggccgcggtggagcgggccaaggcgctg
ccggagtcggcgctgccgcagcccggccagcagccggccggaccgcctcccccgcgctcc
tgggccgacaaggacccggccgccgccgcccggctctcggccgcccgcgccgccgtctcc
gagctggccgagcgcctgcacatgccccaggagaacctgatcaccccggacaccgtgcgc
cggatctgctgggagccgccgaagaacccgaccccgggcgcggtcgaggacaccctcgcc
ggttacggggcgcggaactggcagatccagcaggtcgccccgctcctggtccgggcgctc
gcggcgtccgcctga
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