Streptomyces californicus: I6J39_29055
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Entry
I6J39_29055 CDS
T07611
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
scal
Streptomyces californicus
Pathway
scal03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
scal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I6J39_29055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scal03000
]
I6J39_29055
03400 DNA repair and recombination proteins [BR:
scal03400
]
I6J39_29055
Enzymes [BR:
scal01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
I6J39_29055
Transcription factors [BR:
scal03000
]
Prokaryotic type
Helix-turn-helix
AraC family
I6J39_29055
DNA repair and recombination proteins [BR:
scal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
I6J39_29055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HHH
HHH_5
DUF6233
Motif
Other DBs
NCBI-ProteinID:
QRV30914
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All DBs
Position
6663535..6664911
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AA seq
458 aa
AA seq
DB search
MMDDRTRYEAVSSRDARFDGAFFFAVVTTGIYCRPSCPAVTPKRANVRFYRTAAAAQAGG
FRACRRCRPDAVPGSAEWNVRADVVGRAMRLIGDGVVDREGVPGLAGRLGYSARQVQRQL
NAELGAGPVALARAQRSHTARVLLQTTGLPVTDIVFAAGFASVRQFNDTIRQIYARTPSA
LRAEAGTGLGGARREGLRSGIPLRLAHRGPYATAAQFDLLAAEAVARVEEVSGPPGRRTY
RRTLRLPYGSGIVAVDEAPAAGSWLEARIHLTDLRDLTTAVQRVRRLFDLDADPYAVDEA
LAADPGLAPLVAARPGLRSPGAADPEEAAVRVLVGRAGAEELVERYGKALDVPCGGLTHL
FPEPGVLAGSAEDPALRTLAAALDDGVLRLDAGADRDEAERTLLTLPGIGPRTAALIRTR
ALGDPDVDPYGTPGAERWRPWRSYAVRHREAAGDPYGD
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
gtgatggacgatcggacccggtacgaggcggtgagcagccgtgacgcgcggttcgacggc
gcgttcttcttcgccgtcgtgaccaccggcatctactgccggccgagctgccccgccgtc
acccccaaacgcgccaacgtgcgcttctaccgcactgccgcggcggcccaggccggcggc
ttccgggcctgccgccgctgccgtccggacgccgttccgggctccgccgagtggaacgtc
cgcgcggacgtcgtcggccgggcgatgcggctcatcggcgacggcgtcgtggaccgcgag
ggcgtccccggactcgccgggcggctgggctacagcgcccggcaggtccagcgccagctc
aacgctgagctgggcgccgggcccgtcgcgctcgcccgcgcccagcgctcccacaccgcc
cgggtgctcctccagaccaccgggctgccggtgaccgacatcgttttcgcggccggtttc
gccagcgtccgccagttcaacgacaccatccggcagatctacgcccgcacccccagcgcc
ctgcgcgccgaagcgggcacggggctcggcggcgcccgccgtgaggggctgcgctccggt
atcccgctgcggctcgcccaccggggaccgtacgccaccgccgcccagttcgacctgctg
gccgccgaggcggtcgcccgggtcgaggaggtgtcgggaccgcccggccgccgcacctac
cggcgcaccctgcggctgccgtacggctccgggatcgtcgcggtcgacgaggcgccggcc
gccggctcctggctggaggcccggatccacctcaccgacctgcgcgatctgacgaccgcc
gtccagcgggtgcgccggctgttcgacttggacgccgacccgtacgcggtggacgaggcg
ctggccgccgatcccgggctcgccccgctcgtcgccgcccgcccgggactgcgctcaccg
ggcgccgccgatccggaggaggccgcggtgcgggttctcgtggggcgtgcgggggccgaa
gagctggtcgagaggtacgggaaggcgctggacgtgccgtgcggcgggctcacccacctc
ttcccggagcccggcgtgctcgccggctccgccgaggacccggcgctgcggaccctggcc
gccgcgctcgacgacggcgtactgcggctggacgccggggccgaccgggacgaggcggag
cggaccctgctgacgctgcccgggatcggcccgcgcaccgccgccctgatccggacgcgg
gcgctcggcgaccccgacgtggacccgtacggaacacccggggcggagcggtggcggccc
tggcgctcctacgccgtacgccaccgggaagcggcgggggacccgtacggggactga
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