Struthio camelus australis (South African ostrich): 104138077
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Entry
104138077 CDS
T08512
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03013
Nucleocytoplasmic transport
scam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104138077 (UPF3A)
03015 mRNA surveillance pathway
104138077 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scam03019
]
104138077 (UPF3A)
Messenger RNA biogenesis [BR:
scam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104138077 (UPF3A)
mRNA cycle factors
P-body specific factors
104138077 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
104138077
NCBI-ProteinID:
XP_009663817
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MGMIEPTGTTPGAGEQTEVFAGKSLPTVFRSKIFVHFVLYAQVVIRRLPPCLTKEQLEEQ
LHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFIDNKGLEYPAV
VEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYCADEEKICANPETLLGEIEARTR
ELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRKRREEERRKRKE
AEKQKKISEKEIRIKLLKKPEKGDEQASEKHKEKGEEADLEENKWEKPSGSGSIKSKSLE
GSLKELKEKSQNDSDKEQRDLERRFREKEPERQRYRLDDGRKHRAHYEFDKFVRRNEEEL
KWGKGYNQDRGKKGNHNYSFTVEAVDKLGKEDKCDDMASKKERIRNKDRPAMQLYQPGAR
IRTHTGSTSKTYDCSGKSFEEALDKKYEADNSAGGGSEKSEEAE
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgggcatgattgagccaactggaacaacccctggggcaggtgagcagacagaagtattt
gcaggtaagtctcttcccacagtatttagatcaaagatatttgtccattttgttttatat
gcgcaggtagttattcgccggcttcctccttgtctaactaaggagcaactagaggaacag
ctacatcctctacctgcccatgattattttgagttttgcactgctgatcccagcctttat
ccacatctctactcaagagcatacattaactttagaaatcccgaggacatccttcttttt
agagatcgctttgatggctatgtcttcattgataataaaggtttggagtatccagcagtg
gttgaatttgctccattccagaagatttcaaaaaagaaattaaagaaaaaagatgcaaaa
gctgggagcattgaagatgatccagaatataggaaatttttagagagttattgtgctgat
gaagagaaaatctgtgccaatcctgagacacttttgggagagattgaggccagaacaagg
gaactcattgctagaagaacaacaccccttttggaatatattaaaaatagaaaattagaa
aagcagagaatacgagaagagaaaagagaagaacgaaggcggagagaattggaaaaaaaa
cgtctgcgagaggaggagaagaggaagcgcagagaagaagaaagacgtaagagaaaagaa
gcagagaagcagaagaaaatttctgaaaaagaaataaggatcaagcttcttaagaagcct
gaaaaaggagatgagcaggccagtgaaaagcacaaagaaaaaggtgaagaagctgacctt
gaagaaaacaaatgggaaaaaccatctggatctgggagtataaaatccaagtcattggag
ggttcactaaaagagcttaaggaaaagtcacaaaatgatagtgacaaagagcaaagagat
ttggagagaagatttcgagaaaaagagcctgaaagacaaaggtatcgattggacgatggc
agaaagcatagagctcactatgagtttgacaagtttgtgagaaggaatgaagaagagctg
aaatgggggaaaggatacaaccaagacagaggaaagaaagggaaccacaactacagcttc
actgtggaggcagtagacaaactgggtaaagaggacaagtgtgatgacatggcatccaaa
aaggagcgcataagaaataaggatcgtccagccatgcagttataccagccaggagctcgc
attcgaacacatacgggatctacaagtaagacctacgactgcagtgggaagtcctttgaa
gaggctcttgacaaaaagtatgaggcagataattcagctggaggtggttctgagaagagt
gaagaggcagaataa
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