Struthio camelus australis (South African ostrich): 104138257
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Entry
104138257 CDS
T08512
Symbol
SETX
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
scam
Struthio camelus australis (South African ostrich)
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scam03021
]
104138257 (SETX)
Enzymes [BR:
scam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104138257 (SETX)
5.6.2.5 RNA 5'-3' helicase
104138257 (SETX)
Transcription machinery [BR:
scam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104138257 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
ResIII
Motif
Other DBs
NCBI-GeneID:
104138257
NCBI-ProteinID:
XP_009664069
Ensembl:
ENSSCUG00000002596
LinkDB
All DBs
Position
Unknown
AA seq
2842 aa
AA seq
DB search
MSTCRWCTPSGSDTTEFLKNYASKGLSQEDLEGSNDDLCYCLECVVEYHRAREKLPSLHE
VLWELETSRLIAHIEKSMKEVGEDDELFIVDENGETQLSGYVGPDFENNLRVPLLEILKY
PYLLLHEKVSELCVEVLCRMEEGHNSFQVFEKYPGIYLFLVHPHEVIRRWAILTARNLGK
VDRDDYYDLQEVLTCLFKVIELGLFDSPDIYSSSMIEKGKLVLLPSHLYDTTNYKNYWLG
ICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEADDDSTDPFWPALHCFMVILDQL
GSKVWGQLIDPVQAFQTIINSVSYNSEIKNIRNSFKRTKSEPESDYDDEMVTCSQIVYDY
NTEKPQKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGRDMRVHHSTFLWFIPFVQSLM
DLKDLGVAYIVEVIHYLCSEIRDILNERIQQCDKVSEFFVLILVSIIELHRNKKCLHLLW
VSSQEWVEAVVRCAKLPAVAFTRCTEKASGNYQRGSSALSSQASNSVQHACVQLIRSLLR
EGYQIGQHALCKQYLDKINLLLRGNLSLGWQLSIQETQELQMCLKQVIRSIKGRAMSTSV
PVENNANSAALPTFPIKQEKRMRDDGYKMTAHGRDDLCLPPSFISKGVRDGGCQENLFPR
RSDAWEEECRGAFKTSRPFTERRPVDVYVKKEPNDETAREYEYPQNSLAAKKYGEVQKNR
DSPLVSWNCDKDNWFFNPNFQGSDFKRSGELDDKCETEPLTPKRLAARTCIGSPEHVQSA
DEKESNMSPNSSLKFKIDADRLTSLKQKVLKTDWISKLSQPVKPPNLKNSSVAKSASEAD
QPQLCADSLCTSKDCYRHQGVNLVCENEISVNSHASRSFENRQEKSTNNTFQYRLDSIKQ
ESEETLLDCSRSSKNKPDLQENEDDHLLLSGISNNRKKGPNEERSSSLLKSVFDKDLNMQ
TSDQEQPDLGNLRKDDCKGRILRTFCTDKTLANGHVPSSPENKGRVSNAALQISPLSVKC
ESSDRLLEFSKNFKEEDSSVGKRGEDFVTVASGDNNLTDSEVDRDLSKLSLAAYAKSVNF
PVESSQETSVHHNICDIKRKVKGAVRSSSSVQNNKSPCDADCLDNQVIIISDSSDEEKNV
TVEEKTEKTNENEPPEKQPLTSGSISDSESKKELKTPSSPLLHEECESQYFEFETEDEVF
SVWQDTQMYSMEKTQEYKQDRLSTSVGSSDSDSVLKDYTNDWGYDTDYISDDTIEKEANV
MEKQIDSLSHQTEAGNAEEVSSSALQESVSKGNAKDQLENSSDKSAVVKDFIPNTELPEP
RASVSNISLASKLALKKNSMSPGKNLAKSKVARTAQRSPKRAPLKTAQSKKLSQRTSKNS
QPGRSTPAVVPPKKARQCPTPASTAEKLGLKKAPRKALELSQRSLESLAQLRSYGKAAGK
VGIAQKRKVKLITPQTLSIKNNKKMLACQDLQFLRQTRPKQSVRGKNLAGSSSEGRSKKV
SKVDAKSVKQKLESFGLTSVEGAIETQGGRKVEQTFCPSANERKQIRDASVEKEDVSMQT
TNASKIPVFSDLNIKTKDDNTMVPPVPMDLDLFSPGAAEDDKDKPSEGGCVVQSKFEKTA
LKENGCKSNENSDDDDDLFLTQLDPVDMELCSQEENDGDVTITSKPVEIEIGAAESPQQN
KPLSVGKCKYKDCMEKVEKIGEYCRKHSSTNLETDHLFAKPLLPPSKTKKPFTTKIFSSA
SSSRNAAFTKDLEDVKKLPPSSKNKVNVTKPVVCRPPNAKTIPAGNQIRKSPSFSNVPQP
SVSSNVLRPQNTQIDNASNISGRSVREHHSSFLGAQQRDHSIFVKEVLKWTYEMFANSSQ
YGPPDNLLRSVVASVPIKFQGYNDYFNTFFPLMMLNAFETLAQDWLESQRMREKSYYFHL
QNFCADLNRADFIAHIRESDLARQLHPKEDDLIFLVVQERKNTFGEESEMVNHLVKHVGL
VTRFSRAPGGXARQNEQHPVCHLSVQTQGNLSLFINKQVKCVVVGSLVTTQRTFKGLLLL
SRSPLAKPIINPSYNDFCPRDLHVASESDAYMKDYNEDQKRAIETAYAIVKQHPGLPKIC
LIHGPPGTGKSKTIVGLLSRVLRENARNEKRTQKPNSKIKLNRFLVCAPSNAAVDELMKK
IIVEFKEKCQNRQDPLGNCGDISLVRLGAEKSISSEVRGFSLDKQVEHRMKRKLPDRDQD
IQKKKEALDQKLDMLSRQRAMHRCEKRAINQMLDDEIGRLSKERQQLASQLKEVRGYSQR
IQAEIILESDIICCTLSTSGGTLLESAFWRQGLDPFSCVIVDEAGQSCEVETLIPLIHRC
NKLVLVGDPRQLPPTVKSQKAQDYGYDQSLMARLHRHLEAQVQQNVLRNLPVVQLTVQYR
MHPDICLFPSNYVYGRTLKTDKATEENRCSSEWPFQPYLIFDVGDGHEERDNDSFHNPQE
VKLVMELIKTIKGKRKDLGLRHIGVITPYSAQKKKIQEELDRVFKNNSSGEVDTVDAFQG
REKDCIIVTCVRANSTKGSIGFLASLQRLNVTITRARFSLFILGRLKTLMENKDWNELIQ
DAQRRGAIIKTSDKSYKQDAAKILKLKPTVQKPPCQPPAKAGANKAPPVQAHSSSSRRGE
LTNLREASNTRELSAGAGPGPAAPQGSRGLQQPQRTQAADSRRAPDSTPVEAAAQPGDRE
KPRDPRLANRTETKGKEQASKDSNRSAQSNLGATSQQGPEVSSAIRDQISKTETSKKPQP
KKPQQRTGRSDVPSTSSYAAQRESDRRAALSKNDSKAISGGGQSSSSKWSKYKDYRFVAR
RAPDESPESKDSNSAKRRKTFH
NT seq
8529 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgatggtgtacgcctagtggttctgataccacagagttcctgaagaac
tatgcttccaaagggttgtcccaggaagatcttgaaggatccaatgatgatctctgttac
tgcctggagtgtgtggttgaataccatagagcgagggagaaattgccaagcttgcatgag
gtcctgtgggagttggaaacctcccgtctcattgcccacattgagaaatccatgaaagaa
gttggagaagatgatgaattgtttatagtggatgagaatggggagacacaactatctggt
tacgtaggcccggattttgagaataacttgcgagtgccccttctggaaatactgaaatat
ccatatctgctgctgcatgagaaagtcagtgagctttgtgtagaagtgctctgtagaatg
gaagaaggtcacaactcctttcaggtctttgagaaatatccaggaatttatctctttttg
gtacaccctcatgaagtgattcgtcgatgggccatcctaacagcaaggaacttaggaaag
gttgacagggatgattactatgacttacaggaagtgctgacttgcttgtttaaagttatt
gagttggggctttttgacagtccagatatttatagctcttcaatgattgaaaagggtaaa
ctcgtccttctgccatctcacttatacgatactaccaactacaagaactattggctaggt
atttgtatgttgctaacagtgctggaagaacaagctatggattccttgttgctgggccca
gacaaacagaatgatttcatgcagtctatacttcacaccatggagaaagaagcagatgat
gattctactgaccccttctggccagcactgcactgtttcatggttattttggatcaactt
ggatctaaagtatggggtcagcttattgatcctgtccaagcctttcaaaccattatcaac
agtgtgagctacaacagtgaaataaaaaatatacgcaatagctttaagaggaccaaatct
gaaccagagtcagactacgatgatgaaatggttacttgcagtcagattgtatatgattac
aatacagaaaagccccaaaaggatactggatggaaaactgccatttgtccagactattgc
cccaacatgtatgaagatatgcaaacactggctaacgtgcttcagtctgatattggcaga
gatatgcgtgtccatcacagcacttttctgtggttcatcccttttgttcagtcacttatg
gacctcaaggacttgggtgtggcatatatagtagaggtcattcactacctctgctcagaa
atcagggatattcttaatgaaagaatccagcagtgtgacaaagtctctgaattttttgtc
ctgatcttggtgtcgattattgaactacacagaaataaaaaatgcctgcatttgctatgg
gttagctcacaagaatgggtggaagcggtggtgaggtgtgctaagctcccagccgtagca
tttacacggtgcaccgaaaaagcatctggaaactatcaaagaggttcatcggcactgtct
tcacaggcttctaactctgtgcagcatgcttgcgtccagttgatacgcagccttcttaga
gaaggttatcaaatcgggcagcatgctctttgcaagcaatacctagacaaaatcaatctc
cttctacgtggaaatctatccctaggttggcagctgagcatccaggaaacccaggaatta
cagatgtgtttaaagcaggttataagaagtataaagggcagagcaatgagtacctctgtg
cctgtggaaaacaatgcaaactctgcagctttgcccacctttcctataaagcaggagaag
aggatgcgtgatgatggatataaaatgactgcacatggcagagatgacctttgtttaccc
ccttcttttatatcgaagggagtcagagatggaggttgtcaggagaaccttttccctaga
agaagtgatgcctgggaagaggaatgcagaggtgcctttaaaacttcaagacctttcact
gaaaggcgtcctgtggatgtgtatgttaaaaaggaacctaatgacgagacagctcgggaa
tatgaatacccgcaaaactctttggcagcaaaaaagtatggggaagttcagaaaaacagg
gacagtcctcttgtatcatggaactgtgataaggataattggttcttcaatccaaacttt
cagggttctgattttaaaagaagtggagagttagatgataaatgtgaaacagaaccccta
acaccaaagcgtctggctgctcggacttgcattggttctccagaacatgttcaaagcgca
gatgagaaggaaagcaacatgtctcctaattcctccttaaagtttaaaatagacgcagat
agactcacgagtctgaaacagaaggtactgaaaactgactggatctcaaaactatcgcag
ccagtgaagccacccaacttgaaaaacagtagtgtggcaaaaagtgcttcagaagcagac
caacctcagctgtgcgctgacagtctgtgtacaagcaaagattgctacagacaccaagga
gtgaatcttgtgtgtgaaaatgaaatctctgttaattctcatgcttcaaggagctttgaa
aacaggcaggaaaaaagcacgaacaatacttttcaatacagattggactccattaaacag
gaatcagaagagacgctgctggattgctctcgttcctctaaaaacaaacctgatttgcaa
gaaaatgaagatgaccaccttttgctttcagggattagcaacaataggaaaaaaggacct
aatgaagaaagatcaagttcgttgttgaagtccgtgtttgacaaagaccttaacatgcaa
acttcagaccaggaacagcctgatttaggcaacttacgtaaagatgactgcaaaggtcgg
attctgaggacgttctgtacagataaaactttagcaaatgggcatgttccatctagccct
gaaaataaggggcgtgtatccaacgctgctcttcagatcagtccgctctcagtgaagtgt
gaatcaagtgacagactgttagaattttcaaagaattttaaggaagaagacagttcagtg
gggaaaaggggtgaggattttgtgactgtggcttctggagataacaatttaacggactct
gaggttgatcgagacctcagtaagttatctttagctgcgtatgccaaaagtgtcaatttt
cctgttgaatcaagccaagaaacctcagtgcatcataatatatgtgacattaaaaggaaa
gtgaaaggtgctgtaagatcttccagcagtgtccagaataacaagtcaccctgtgatgca
gattgccttgacaatcaagtcattatcatttcagactcctctgatgaagaaaaaaacgtg
actgttgaggaaaaaacagaaaaaacaaatgaaaatgagcctccagaaaaacagccttta
acatccggcagcatttctgatagcgagagcaaaaaagaattgaagacgcctagctctccc
ttgttgcacgaagaatgtgagtctcagtactttgagtttgaaacagaagatgaagtcttt
tcagtttggcaagatactcagatgtacagtatggaaaaaactcaagaatacaaacaagac
cgtctttcaacatcagttggtagcagtgactcagatagcgtactgaaggattacacaaat
gattggggttatgatacagattacataagcgatgacaccattgaaaaagaagcaaatgtg
atggaaaagcagatagatagtctctctcatcagacagaagctggtaatgcagaagaagta
tctagttcagccttacaggagtctgttagtaagggaaacgcaaaagatcaactagagaat
tcttcagacaaaagtgctgttgttaaagactttatcccgaacaccgaattgcctgaaccc
agagcatctgtgtctaacatatcgttagcttcaaagttggcccttaagaaaaacagcatg
agcccggggaagaatttagcaaagtctaaggtggcaagaactgctcaaagaagtcccaaa
agagctcctcttaaaacagcacagagtaaaaaactatctcaaaggacctcaaaaaactct
caacctggcaggtcaacacctgctgtggttcctccaaagaaagctcggcagtgtcctaca
ccagcatcaactgcagaaaagcttggcctgaagaaggcaccccgcaaagcacttgagtta
tctcagcgctctttagagagtctggctcaattgcgtagctatggtaaagctgctgggaaa
gttggaattgcccagaaacggaaggttaaattaattactcctcagactttgtcaattaaa
aataataaaaaaatgctagcctgccaagatcttcagtttttaaggcagacgaggcccaaa
caaagtgtcagagggaaaaatctcgcaggaagttcttccgagggtagaagcaaaaaggtt
agcaaagtggatgcgaaatctgtgaaacaaaagcttgaaagttttggcttgacatctgtt
gaaggagccattgaaacccaagggggaagaaaagtggagcagaccttttgtccctcagcc
aatgagagaaaacaaatcagagatgcctccgtggagaaggaggatgtctccatgcaaaca
acaaacgcctctaaaatacctgttttttcagacttgaacataaaaacaaaagacgacaat
acgatggttcctcctgtacctatggatttagatctcttttcccctggagctgctgaagat
gataaagataaaccttcagaaggaggttgtgttgtccagtctaagtttgagaagacagct
ttgaaagaaaatgggtgtaaatcaaatgaaaacagtgatgatgatgatgatttattttta
actcagttagatcctgtggatatggaattatgttcccaagaggaaaacgatggagacgtt
actataactagtaaaccagtggaaatagaaataggtgctgctgaaagccctcagcagaac
aaacccttgagtgttgggaaatgtaagtacaaagactgtatggaaaaagtggaaaaaata
ggtgagtactgtagaaagcattcaagtaccaatttggaaacagatcacttgtttgccaaa
cctttgctgccaccttctaagacaaaaaagcctttcactaccaaaattttcagctcagca
agttcttcgcggaatgcagccttcaccaaggatcttgaagatgttaaaaaactaccacca
tcttcaaaaaacaaagtgaacgtaacgaaacccgtggtatgcagaccaccaaatgcaaag
actataccagcaggaaatcaaatacgcaagtccccaagtttcagtaatgttcctcagcct
tctgtttccagtaacgttctccggccgcaaaacacacagatcgacaatgcttcaaatatt
tccggaagatctgtccgagaacatcattcttcctttcttggggctcagcagcgtgatcat
agtatttttgttaaagaagtcctgaagtggacttatgaaatgtttgcaaactccagccag
tatgggcctccggataatctcctgcgttctgtagtagcctctgttcccatcaaatttcag
ggatacaatgactattttaatacgtttttccccttgatgatgctaaatgcttttgaaaca
ctggcacaagactggttagagagccagagaatgagagagaagagttactacttccacttg
cagaacttctgtgctgacttgaatagagcagattttatagctcatattcgagaaagcgat
ttggcaaggcaacttcatccaaaggaggatgatttaatctttctggtggtccaagagaga
aaaaacacctttggggaagaaagtgagatggtgaaccatctagtgaagcacgtgggtctt
gtgacacgattttcgcgtgcacctggcggttaagctagacaaaatgagcagcatcctgtc
tgccatctttctgtgcaaactcaaggcaatttgtcactcttcataaataagcaagtgaaa
tgtgtggtggtcggctccctagtgactacgcagcgaacgtttaaaggtctgctactactg
agcaggagtcccctggcgaaacccatcataaacccaagttacaatgacttctgtcccaga
gatttgcacgtagcttcagaaagtgatgcttatatgaaagactacaatgaagatcaaaag
agagccatcgagactgcttacgccattgtaaaacaacatccaggacttcccaagatctgt
cttatacatggaccccctggaacagggaaatcaaaaactattgttggacttttgtctcgt
gttttgagagagaacgctaggaatgagaaaagaactcaaaaaccaaattccaagatcaag
ctaaaccgttttctagtttgtgcaccatccaatgctgctgttgatgaactcatgaaaaag
atcatcgttgaatttaaggaaaaatgccaaaacagacaggatcctttggggaactgtggt
gatatcagtttagtgcgactgggtgcagaaaaatctatcagcagtgaagtacgtggattt
agcctggataagcaagttgaacatcgaatgaaacgaaaactacctgaccgtgaccaggat
attcagaagaaaaaagaagctctagatcaaaagctggacatgctgtctcgtcaacgtgcc
atgcatagatgtgagaagagggcgataaatcaaatgttagatgacgaaattggcagactt
tcaaaggagagacagcagcttgcttcccagctgaaggaggttcgggggtactcccagaga
atacaggcagaaatcatcttggagtctgacatcatctgctgcacactgagcacaagtgga
gggactctgctggaatccgctttttggcggcagggactcgatccattcagctgcgtcatt
gtggatgaggcagggcagtcctgtgaggttgaaacactcattccgctgattcatcgctgt
aataaacttgtccttgttggagatcccagacagctccctcctactgtaaaatcacagaaa
gctcaggactatggctacgatcagtccttgatggcacgcctgcacagacacctggaagca
caggtgcagcagaatgttttaagaaatctgccagttgtgcagctgactgtgcagtacagg
atgcaccctgacatctgcctcttcccatccaattacgtttatggcaggactctgaagact
gacaaagcaactgaagagaacagatgttcttcagaatggccattccagccttacctcatc
tttgatgtaggagatggtcatgaggagagagacaatgactcttttcataatccccaggaa
gttaagctggtgatggaattaattaaaacaattaaaggaaaaaggaaagatcttggtctt
cgtcacattggagtaattaccccttacagtgcacagaaaaagaaaattcaagaagaacta
gacagagtgtttaagaacaacagctcaggggaggtggacacggtggatgcgttccagggg
cgagagaaagactgcatcatagtgacgtgcgtccgagcgaacagcactaaagggtcaatt
gggtttctggcaagtcttcagcgtctgaacgttacaattacccgggccagattcagcctc
ttcattctcggaagactaaaaacactcatggaaaataaagactggaatgagttgattcag
gatgctcaaagaagaggtgctattatcaagacatcagacaaaagctacaagcaggatgct
gctaagattctgaagctcaagccaacagtacagaaacccccctgccagccccccgccaag
gcaggggcaaataaagctcctccagtgcaggctcattcctctagtagcaggagaggtgag
ctcaccaatctgagggaggccagcaatacacgggaactctctgctggtgctggccctggc
cctgcagcaccacaaggaagcagaggtctccagcaaccacagaggactcaggctgcagac
tccaggagagcccctgattccacaccagtggaggctgcagcacagcctggtgatcgagag
aaaccacgggacccaaggctggctaatagaacagagacaaaagggaaggagcaggcctca
aaagacagcaaccggtcagcccagagcaatctgggagcaacatcacagcagggcccggaa
gtatcctcagctatcagggatcagatttccaaaacggaaacctctaagaagccccaacct
aagaagccccaacaaaggacgggacgatctgatgtgccttccacgtcatcttatgcagct
cagcgagagagtgaccggagagctgctttatcaaaaaatgattcaaaagccattagtgga
ggaggtcaaagtagtagcagtaagtggagcaaatacaaagactatcgttttgtagccagg
agagcaccagatgaatcaccagagagcaaagactcaaacagcgccaagcgaagaaagacc
tttcactga
DBGET
integrated database retrieval system
