Struthio camelus australis (South African ostrich): 104138615
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Entry
104138615 CDS
T08512
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104138615 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scam00536
]
104138615 (COL3A1)
Glycosaminoglycan binding proteins [BR:
scam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104138615 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
104138615
NCBI-ProteinID:
XP_009664568
LinkDB
All DBs
Position
Unknown
AA seq
1461 aa
AA seq
DB search
MMSFVQKVTLLILAVFQPSVILAQQDVALAACTHLGQVYADRDVWKPEPCQICVCDSGSV
LCDDIICDDQELDCPNPEIPFGECCPVCPQTTPQPTRSPNVVRGPKGDPGSPGIPGRNGA
PGPPGQPGSPGAPGAPGICQSCPSVSGGSFSPQYDSYDVKAGSAGIGYPQPISGFPGPPG
PSGPPGPPGHAGPPGANGYQGSPGEPGQPGPSGPPGPPGLIGPAGPPGKDGEPGRPGRNG
DRGIPGLPGHKGHPGMPGMPGMKGQRGFDGKDGAKGDSGAPGPKGETGLPGANGSPGQPG
PRGPAGERGRPGNPGGPGAHGKDGSPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGPAG
ASGTPGERGEPGPQGHAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPG
TSGSPGAKGSPGEPGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGTNGEPGQNGVPG
TPGERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGGPGLPGMRGLPG
VPGSPGSDGKPGPPGQQGESGRGGPPGPAGPRGQPGVMGFPGPKGNEGAPGKNGERGPSG
PPGTPGPAGKNGDVGLPGPPGPPGASGDRGEPGPSGSPGLQGLPGGPGPAGENGKPGEPG
PKGEIGGPGFPGPKGENGIPGERGAQGPPGPPGARGGPGPAGSEGAKGPPGPPGAPGGTG
LPGLQGMPGERGASGSPGPKGDKGEPGGKGADGMPGARGERGNVGPIGPPGPAGPPGDKG
ETGPAGAPGPMGARGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPTGLRGEAGPPG
AAGPQGGPGAPGPPGPQGTKGERGSPGGPGAAGFPGARGLPGPPGNNGNPGPPGSAGPAG
KDGPPGPPGSAGSPGSPGPAGTRGEPGSPGEKGPPGARGERGAPGEPGPQGIVGGRGNTG
LPGLRGPAGPAGMAGAKGEDGKPGTNGAPGERGAPGPQGPVGQRGLPGEPGRDGNPGSDG
LPGRDGSPGGKGDRGESGTPGPPGPPGHPGPAGNNGAPGKAGERGFQGPPGPPGSSGPAG
ARGPAGPQGPRGDKGETGERGSAGIKGHRGFPGTPGLPGPPGPLGPQGAIGSPGASGARG
PPGPAGPPGKDGTSGYPGPIGPPGPRGNRGESGPAGPPGQPGLPGPSGPPGPCCGGGIAA
LGAGEKGPSGYGYEYRDEPKENEINLGDIISSMKSINNQIENIISPDGSRKNPARNCRDL
KFCHPELKSGEYWVDPNQGCKMDAIKVYCNMETGETCLSANPSTVPRKNWWTSQSSERKH
VWFGESMNGGFQFSYGDPELPEDVSEVQLAFLRILSSRASQNITYHCRNSIAYMDQASGN
VKKALKLMSSVESEIKAEGNSKFTYAVLEDGCTKHTGEWSKTVFEYSTRKTMRLPVIDIA
PIDIGGPDQEFGVDIGPVCFL
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaagtaactttgctcattcttgccgtgtttcaaccctcagtt
attttggcacaacaagacgtcgccctagcagcatgtacccatcttggccaggtttatgct
gaccgggatgtttggaaaccggaaccatgccagatctgtgtgtgtgactccggatctgtt
ctctgtgatgacatcatctgtgatgatcaagagttagactgccccaacccagagattccc
tttggagagtgttgtccagtttgtccacaaacaacaccacaacctactagatctccaaac
gtcgtccgaggtcccaagggagatcctggttctcctggtattccaggcagaaatggtgcc
cctggccctcctggacagccagggagtcctggagctcctggtgccccagggatctgtcag
tcatgtcccagtgtaagcggaggtagtttttctccacagtatgactcctatgatgtgaag
gccggttcagctggtattggttaccctcagcccattagtggctttccaggacctcctggc
cccagtggcccccctggcccacctggtcatgcaggtccacctggcgctaatggataccaa
ggttcccctggagaaccaggacagcctggcccttctggacctccaggccctcctggactg
ataggcccagctggtccaccaggaaaagatggagaaccaggaagaccaggtagaaatgga
gatcgaggaattcctggattaccgggtcacaagggacaccctggaatgcctggaatgcct
ggaatgaaaggtcaaagaggttttgacggaaaagatggcgcaaaaggtgacagcggtgct
cctggtccaaagggtgaaactggtcttcctggcgcaaatggatcaccaggccaaccggga
ccaagaggtccagctggtgaaagaggaagacctgggaatcctggtggccctggcgctcat
ggcaaagacggatctccaggagcagctggcccaccaggtcccccaggtccccctggaact
gcaggatttccaggctctccaggttttaagggtgaagctggtcctccgggtcctgcaggt
gctagtggtactcctggagagagaggggaacctggtcctcaaggtcatgctgggccacct
gggcctcagggtcctcctggaagagctggaagccctggcaacaagggtgaaatgggacct
tctggtattcctggtgctcctggtttgccaggaggccgtggtcttcctggtcctccaggt
acaagtggaagtcctggagcaaaaggctctccgggagaacctggtaagaacggtgcaaaa
ggagatccaggcccaaaaggagagcgtggtgaaaatggcaccccaggtgctcctggacct
cctggtgaggaaggcaaaagaggtacaaatggtgaaccaggccagaacggcgtacctggc
acacctggagaaagaggctcccctggtttccgtggcttaccaggtagcaatggacttcca
ggtgaaaagggtcctgcaggtgaacgtggtagcccaggtcctcctggcccaagtggacct
gcaggagagcgcggacaagatggaggcccaggtcttccaggaatgagaggtttgcctgga
gttccaggaagccctggaagtgatgggaaacctggtccccccggtcagcagggggaatct
ggccgtggtggtccacctggcccagcaggcccacgtggtcaaccaggcgtaatgggtttc
cctggtcctaaagggaatgagggtgcaccaggtaagaatggagaaagaggccccagtgga
ccacccggcacacctggtcctgcagggaagaatggtgatgttggactcccaggtcctcct
ggacctcctggtgcttctggggatagaggagaaccaggaccatcaggttcacctggcctc
cagggattgcctggtggaccaggaccagctggagagaatggaaagcctggagaaccgggg
ccaaaaggtgaaattggaggacctggattcccaggccctaagggtgaaaatggtattcca
ggtgaacgtggtgcacagggtcctccgggacctcctggagcaagaggtgggccaggtcct
gctggctccgaaggtgccaaggggcctcctggacctcctggagcccctggaggcacaggg
ctccctggcctacaaggaatgccaggagaaagaggagcttctggaagtcctggaccaaaa
ggagataagggagaacctggtggcaaaggtgctgatggcatgcctggtgcaagaggagag
agaggtaatgtaggtcccatcggccctcctggtcctgctggcccacctggagataaggga
gagactggtccagcaggcgccccaggtccaatgggtgcccgtggtggtcctggtgagcga
ggagaacaaggtctcccaggacctgctggcttccctggagctcctggccaaaacggggaa
cctggtggcaaaggagaaagaggcccaactggtctaagaggagaggctggaccccccgga
gctgcaggtccccaaggtggtcctggtgcaccaggtccacctggtccccagggaacaaaa
ggagaacgcggatctcctggaggacctggtgctgctggtttccctggtgctcgtggtcta
cctggtccccctggtaacaatggtaatccaggtccacctggtagtgcagggcctgcaggc
aaggatgggcctcctggacctcctggtagtgctggttctcctggcagtccagggcctgct
ggaacaagaggcgagcctggttcaccaggtgaaaaaggcccaccaggtgcacggggagaa
aggggagcaccaggtgaaccaggtcctcaaggtatcgttggtggccgtggtaacacaggc
ttaccaggtctgcgtggcccagcgggtccagcgggtatggcaggtgcaaagggtgaagat
ggtaagccaggcaccaatggtgccccaggagaacgtggtgctcccggtccacagggccct
gttggacaaagaggtctacctggagaacctggtagagatggtaaccctggctcagatggc
ttgcctggacgtgatggatccccaggaggcaaaggtgaccgtggtgaaagtggcactcct
ggccctcccggacctcctggtcaccctgggcctgcaggtaacaatggtgcacctggaaaa
gctggtgaaagaggatttcagggtccacctggccctcctggctcctctggtcctgctggt
gctcgtggtcccgctggtcctcaaggtcctcgtggtgataaaggtgaaactggtgaacga
ggtagcgctggcataaagggtcatagaggatttcctggtacccctggcctcccgggtcct
cctgggcctctgggtccacagggtgcaattggaagtccaggagcttcaggtgcaaggggt
cccccaggaccagctggcccccctggaaaagacggtacaagtggttacccaggtccaatt
ggtcctcctggcccgcgtggtaacagaggtgaaagtggccctgcaggtccaccaggtcaa
cctggtcttcccggtccttctggtcctcctggtccatgttgcggtggcggtattgctgcc
ctcggtgctggtgaaaaaggtccgtcaggctatggttatgaatatcgagatgagccaaaa
gaaaatgagatcaacctgggtgacattatatcttcaatgaaatcaattaataaccagatt
gaaaacatcattagtcctgatgggtcacgaaagaatccagctcgtaactgcagagatctg
aaattctgccatcctgagctcaagagcggagagtactgggtcgatcccaaccaaggttgc
aagatggatgctattaaagtatactgtaatatggagactggtgaaacatgcctcagtgct
aaccccagcactgtgccaaggaaaaactggtggaccagtcaaagcagtgaaaggaaacat
gtttggtttggagaatctatgaatggaggcttccagttcagctatggtgatcctgagctt
ccagaggacgtctcggaagttcagctggcgttcctcaggatcctctctagccgggcctct
cagaacatcacttaccactgcaggaacagcattgcctacatggatcaagccagtggaaat
gttaaaaaagctctgaaactgatgagctctgtggaaagtgagatcaaggctgaaggaaac
agcaaattcacatatgctgttctggaagatggctgtactaaacacactggcgaatggagt
aaaacagtctttgaatacagcacacgcaagacaatgaggttgcctgtgattgatattgca
cccatagatattggtggtcctgatcaggaatttggtgtggacattggcccagtctgcttc
ttataa
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