Struthio camelus australis (South African ostrich): 104138733
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Entry
104138733 CDS
T08512
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam04382
Cornified envelope formation
scam04510
Focal adhesion
scam04512
ECM-receptor interaction
scam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104138733 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104138733 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104138733 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104138733 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scam04147
]
104138733 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
scam00536
]
104138733 (COL4A1)
Exosome [BR:
scam04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104138733 (COL4A1)
Glycosaminoglycan binding proteins [BR:
scam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104138733 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104138733
NCBI-ProteinID:
XP_009664786
Ensembl:
ENSSCUG00000000969
LinkDB
All DBs
Position
Unknown
AA seq
1632 aa
AA seq
DB search
MEASSGCCCWRTFHPLAKVTGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEGP
PGPPGLKGDTGEPGLPGTKGTRGPPGSSGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGE
RGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPTLLKGDKGFPGQPGLPGPPGTPG
FQGPMGPPGLPGEPGPPGQPGPPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMKE
KGSEIIRGEKGEPGEKGEQGVPGLPGSGFKGEKGEPGKPGPRGKPGKDGEPGPKGEPGLP
GGYGIPGRPGEPGVKGEKGDQGLPGPPGRVIDTGAVDSFGEKGDPGVSGLPGLKGQKGEK
GFPGIQGIPGPPGRPVPDRVGAPGVPGERGEKGEKGSPGFPLPGPPGRDGFPGPPGLPGP
PGPPGVTDGIDQCQPGEPGAPGRPGAPGQHGFPGEMGEKGEKGDSCALCEEVGPPGLPGP
QGPPGPAGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLIGSPGAKGEPGDFSYEPFLKG
EKGDPGFPGQPGIPGREGTPGKDGLPGPQGPKGASGTAGLKGERGPPGQPGFPGVRGERG
FPGPPGTGSAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGFPG
PQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGQPGTPGTPGLDGL
PGAPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGFR
GDPGLPGLQGLQGSPGAPGLGPQGSPGPAGQPGPQGPPGFPGIKGERGFPGIPGLDMPGP
KGDKGSQGQPGVPGSVGLPGLPGPQGAVGLKGSAGTKGEMGVMGTPGLPGSPGLVGDRGF
PGEKGNQGFKGVIGPQGDPGVKGDKGEVGLPGKPGSMDGMDMVSLKGQKGDQGEKGDHGA
TGEKGLRGEYGEPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPGT
PGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTGSPGLSGEK
GEKGLPGLSGIPGLKGEPGEPGLPGPTGSIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPG
FPGAKGDKGAKGDVGFPGSPGSPGIPGLKGEPGFVGPPGPKGSQGLPGLPGSAMEGPKGD
RGPQGQPGLPGLPGPIGPPGTPGLKGAKGEQGSDGWPGTPGGPGVKGDPGFQGLPGSPGL
PGDIGQKGDLGPPGVPGVPGPKGSPGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKG
DPGLPGPVGPVGLKGFPGVPGPKGQQGVTGPSGIPGPPGSPGFDGKPGQKGEVGPYGPPG
PRGFPGPPGPEGLPGAMGPPGAASVAHGFLVTRHSQTTEEPQCPFGTRLIYHGYSLLYVQ
GNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIT
GDNIRPFISRCAVCEAPAMVIAVHSQTIQIPQCPEGWSSLWIGYSFVMHTSAGAEGSGQA
LASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRS
NVSRCQVCMRKT
NT seq
4899 nt
NT seq
+upstream
nt +downstream
nt
atggaagccagtagtggctgttgttgttggcgaaccttccatccacttgcaaaggttacg
ggttgttctggctgtggaaaatgtgactgcagtggagtgaaagggcaaaaaggtgaaaga
ggcttgccgggattacagggtgtgattgggtttcctggaatgcaaggacctgaaggtccc
cctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaaagga
acaagaggcccaccaggatcatcaggatatccaggaaacccaggccttcctggcattcct
ggacaagatggccctccaggtccacctggtattccaggatgtaatggcacaaagggtgaa
agaggtcccgtaggtcccccaggtttaccaggactgactggaagcataggacctccagga
cctcctggaatgaagggagatccaggtgaagtgattggtcttttacctcctactctgcta
aaaggtgataaaggctttcccggccaacctggactaccgggtccacctggaaccccgggg
tttcaggggccaatggggccaccggggcttccaggagagccaggtcctccagggcaacca
ggacccccaggtgagaagggctatatgggcttgggctttcagggtcctaaaggtgaaaag
ggagaacaaggggtaaggggcccccccggacctcctggcccagctccacatatgaaagaa
aaaggaagtgaaatcataaggggagaaaagggtgaacctggtgaaaaaggtgaacagggt
gtcccaggattaccaggttcaggtttcaaaggggaaaagggtgaacctggaaagcctggt
ccacgtggaaagcctggaaaagatggtgagccgggaccaaagggagaacccggtttgcct
ggcggttatgggattcccggacgacccggtgaacctggtgttaagggtgaaaaaggtgac
caaggtcttccagggccgccaggaagagttatagatactggagcagtggattcttttggt
gaaaagggagaccctggagtttcaggcttgccaggactgaaaggtcaaaaaggtgaaaaa
ggtttccctggtatacaaggaatcccaggtcctccaggtcgacctgttccagatcgggta
ggagcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccgggtttc
cctttacccggaccacctggaagagatggtttcccgggtcctcctgggttgccgggccca
ccaggtcctccaggcgtaacagatggaattgatcaatgccagccaggagaaccgggtgca
ccaggtagacctggagctccaggacagcatggatttccaggagagatgggagagaaaggt
gagaaaggtgattcctgtgccttatgtgaagaagtaggacctcctggactcccaggacca
caagggccaccaggtccagcaggttttccaggacaagcgggtttcaaaggtgacagaggc
ctacctggacttgatggccttccaggtgtacctgggcccccaggcactccaggacttata
ggcagccctggagcaaaaggagaaccaggagatttttcttatgaacctttcctgaaaggt
gaaaagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggaacacca
ggaaaagatggcctgccaggtccccagggtccgaaaggagcatcgggtacagctggcttg
aaaggagaacgtggtccccccggccaacctggattccccggagtacgtggtgaaagaggt
tttcctggtcctcctgggacaggctcagcagggttgcctggtgacaaaggagacagaggc
tttgctggaaccccaggcttaccaggccttccaggggcaaaaggtgaagcaggacgaact
gttcctctccctggtcctcctggggcagatggccttcctgggccacctggtttccctgga
cctcaaggtgacaaagggaatcctggactaccaggaagacctggcctgccaggagaaaaa
ggtgctgttgggcagccaggtatagggttccctggacctccaggacccaaaggtttccaa
ggtcagcctggctctcctggtcagccgggcactccgggaactcctggcctggatggtttg
ccaggtgccccaggtttacaagggcaaaaaggtgaacctggagtaggtctcccaggccct
aagggattaccaggcccacctggcccagctggtatccctggagaaaagggaaatccagga
ttgcctggcttacgtggcgagcaagggtttccagggattcctggtcagcaaggattccga
ggtgaccctggcctccccggattacaaggtttacagggctctccaggtgcaccaggacta
ggcccgcagggatcaccaggacctgctggacaaccaggaccccagggaccaccaggattt
cctggaataaaaggagaaaggggttttcctggtatcccaggtctagatatgccaggacca
aaaggggataaaggtagccaaggccagcctggagtaccagggtctgtggggttacctggc
ctgcctggaccacaaggggcagttggactgaaaggatcagcaggaaccaaaggagaaatg
ggagttatggggactcctggattgccggggtctcctggactagttggagatcgagggttc
cctggtgaaaaaggtaaccaaggtttcaaaggagtaattggaccacaaggtgatcctggt
gtcaagggggataaaggtgaagtaggtctccctggaaaacctggaagcatggacggcatg
gacatggttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccatggagca
acaggagaaaaagggttacgtggggagtatggagaaccaggaattccagggaaggacggt
gaacctggtactccaggacatccaggaccaaaaggtgatcaagggcccccggggtaccca
ggagatccaggaatcccaggacaaaaaggatcagttggtgaaatgggtttgccaggaaca
cctggagaaaaaggtctgccaggaattccaggttcaccagggacaccagggttccctggg
caaaagggtgaaaaaggagacaaaggagcagcaggttttcctggaattggctttccaggg
tctcctggtgagaagggagaaccgggaagaacgggtagtccaggtttatctggagaaaag
ggtgaaaaaggacttcctggcttaagtggcattccaggtttaaaaggagaaccaggtgaa
cctggtcttccgggccctaccggttccattgggcagaaaggtgaaccaggttatgatggg
attccaggtgcagctggtgcaaagggtgaacaaggtcttccaggtagaggacttccagga
tttccaggtgcaaagggagataaaggtgcaaaaggtgatgtgggttttccaggatcccca
gggagcccggggatcccaggcctgaaaggagaaccaggatttgtaggtccaccaggccct
aaaggcagccaaggtcttcctggactgccaggaagtgcaatggagggacctaagggagac
agaggaccccaaggccaacctggccttccaggtttaccaggaccaatagggccaccagga
accccaggactgaaaggggccaaaggagaacaggggagtgatggttggcctgggacgcct
gggggtccaggagtcaaaggtgacccaggattccagggcttgcctggtagtccaggtcta
ccaggagatattggtcaaaagggtgatttgggacctccaggagttccaggcgttccaggt
ccaaaaggatctcctggcttcccgggtcttaagggagagcgaggtgaccaaggtcttcct
ggatctaaaggtttacaaggtccaccaggcccaccaggtgcttttcagcttgttaaaggg
gatcctggcttacctggccctgtaggaccagttggtctcaaaggattcccgggagttcca
ggtcccaaaggacagcaaggggttacaggaccttcaggtatacctgggccaccgggtagc
ccagggtttgatggtaaacctgggcaaaaaggagaagttggtccttatggtcccccaggg
cccagaggattccctggtccacctggtcctgaaggtttgcctggggctatgggcccacca
ggtgcagcatctgttgctcacggtttccttgttaccagacacagtcaaaccactgaagaa
ccacagtgtccttttggaacgaggctgatttaccatggttactccttgctttatgtacaa
ggcaatgaaagagcacatggccaggatttgggcacggcagggagctgtcttcgtaaattt
agtactatgccattcttattctgcaatatcaacaatgtatgtaactttgcatcaaggaat
gactattcctactggctgtccactcctgaacccatgccaatgagtatggctcctatcact
ggtgataatatcagaccgttcatcagcagatgtgctgtgtgcgaggctcccgctatggta
atagccgttcacagtcagacaattcaaataccacagtgtcctgagggctggagttcactt
tggattggttactcctttgtcatgcacaccagtgctggtgccgagggctccggccaggcc
ctggcctctccaggttcctgcctagaggaatttcgcagcgctcccttcattgaatgccac
ggccggggcacctgcaattattatgcaaatgcttacagcttctggcttgccactatagag
aggaatgagatgttcaagaaaccaacaccctcaacgttgaaagcaggggatctgcgctca
aacgttagccgttgtcaagtctgtatgagaaaaacataa
DBGET
integrated database retrieval system
