Struthio camelus australis (South African ostrich): 104139621
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Entry
104139621 CDS
T08512
Symbol
ERCC3
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03022
Basal transcription factors
scam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104139621 (ERCC3)
09124 Replication and repair
03420 Nucleotide excision repair
104139621 (ERCC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scam03021
]
104139621 (ERCC3)
03400 DNA repair and recombination proteins [BR:
scam03400
]
104139621 (ERCC3)
Enzymes [BR:
scam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104139621 (ERCC3)
Transcription machinery [BR:
scam03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104139621 (ERCC3)
DNA repair and recombination proteins [BR:
scam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104139621 (ERCC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
104139621
NCBI-ProteinID:
XP_009666171
Ensembl:
ENSSCUG00000004858
LinkDB
All DBs
Position
Unknown
AA seq
720 aa
AA seq
DB search
MRNRLWQKPVELIRQAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSL
YAAVSVGLQTSDITEYLQKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESTHPD
VIQQLLQDHVIRDCRLRNAEGEETELITETFTSKSAISKSSEGGLGPSTSQGTDVQNKPD
VPADLFEFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVN
PDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLV
LGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTYSMLGHTTKRSWEA
ERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFL
IGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRA
CQFLIKFHERRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKIN
TIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLV
SQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELSFSSKEEQQQLLQKVLQASDLD
AEEEVVAGEYGSKSAQVSRRVGTMSSMSGADDTVYMEYHSSRSKASSNKHVHPLFKRFRK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaaccggctctggcagaaaccggtggagttaataagacaagctcctgatggccat
atctttctggaagccttttctccagtttacaaatacgcacaggattttttggttgctatt
gctgagccagtgtgcagaccaacgcacatccatgaatacaagctgactgcttactcgctt
tatgctgctgttagtgttggcttacaaacaagcgacatcacagagtatttacaaaaactg
agcaagactggtgtcccagatggaataattcagtttatcaagctgtgtactgtcagctat
gggaaggtaaagctggtactgaaacacaacaggtattttgtggaaagtacccatcctgat
gtcattcagcagcttctgcaggaccatgttattagagactgtcgcctgagaaatgctgag
ggtgaagagacagagctcattacagagacatttacgagtaaatcagcgatttccaaatct
agtgaaggaggcttgggtccatcaacatcacaaggaacagatgttcagaataagccagat
gtcccagctgatttatttgaattctatgaacagatggacaaggatgaggaggaggaggaa
gaaacacagacagtatcttttgaagtcaaacaggagatgattgaagaacttcagaagcgt
tgtatccatttggaatatcccttgctggcagaatatgatttcagaaatgattcagtgaat
cctgatattaatatagatctgaaacctacagctgttcttagaccctaccaagagaaaagt
ctaagaaagatgtttggaaatgggcgagctagatctggtgttattgtcttgccgtgcggt
gctggcaagtctctagttggagtgacagctgcgtgtactgtccgcaagcggtgtctggta
cttggtaattctgcagtgtctgtggagcagtggaaagcccaattcaagatgtggtccacc
attgatgacagccaaatatgtcggttcacttctgatgccaaagacaagcccattggctgt
tctattgctattagcacatactccatgttgggacacacgactaaaagatcctgggaagca
gagagagtaatggaatggcttaaaagtcaagagtggggccttatgattcttgatgaagta
cacactatccctgcaaaaatgttcagacgtgtgctcactatagtacaagctcattgtaag
ctgggacttactgctaccctggtcagagaagatgataaaattgttgacttgaacttcctg
attggaccaaagctctatgaagccaactggatggagctgcagaacagtggctacattgct
aaagtgcagtgtgctgaggtttggtgcccgatgtcacctgaattttatagagaatatgta
gctatcaaaacaaagaagcggatactgttgtacaccatgaacccaaataaattcagagcc
tgccagttcctgattaagtttcatgagcgacggaatgacaaaatcatcgtatttgctgat
aatgtgtttgcactgaaggagtatgcaatccggcttgggaaaccttacatatatggtccc
actgcacaaggagagagaatgcaaattctacagaacttcaagcataatccaaagatcaac
actattttcatttccaaggtaggcgacacatccttcgatctgccagaagccaatgttctg
attcagatttcgtcccatggcgggtctcgaagacaggaggctcaaaggctgggacgagtg
ctgagagccaaaaaaggcatggttgcagaggaatacaatgcctttttttattctcttgta
tcccaagacactcaagaaatggcatattcaaccaagcgacaacgatttcttgtagatcaa
ggttatagcttcaaggtgataacaaagcttgcaggcatggaagaagaagaactttcattt
tcatccaaagaagaacagcagcagcttctccagaaagtcctgcaagcatctgacctagat
gctgaggaggaggtagtagctggagaatatggttccaagtcagctcaggtgtcccgtcgt
gtgggcacaatgagctctatgtcaggagcagatgatacggtttacatggaataccactct
tcccggagtaaggcatcttcaaataaacatgtccatccattatttaaacgcttccggaaa
tga
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integrated database retrieval system
