Struthio camelus australis (South African ostrich): 104140316
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Entry
104140316 CDS
T08512
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03420
Nucleotide excision repair
scam04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104140316 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
104140316 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scam04121
]
104140316 (DDB1)
03400 DNA repair and recombination proteins [BR:
scam03400
]
104140316 (DDB1)
Ubiquitin system [BR:
scam04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
104140316 (DDB1)
DNA repair and recombination proteins [BR:
scam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
104140316 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
104140316 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
104140316
NCBI-ProteinID:
XP_009667355
Ensembl:
ENSSCUG00000000185
LinkDB
All DBs
Position
Unknown
AA seq
1131 aa
AA seq
DB search
MCRQTVGAGDIGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRP
KGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGIIGIIDPECR
MIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQGRH
VKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA
PPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETS
IAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLER
QGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRETDNTLVLSF
VGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSE
WKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVACLDITPLGDT
NGMSLLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDG
ALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFS
NVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEV
SQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHETSFGEEVEVH
NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV
VFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHYNNI
MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAE
NAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGETSTPTQGSVL
FGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFI
DGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaggcagacagtgggagcaggggacatagggcacttcacctctgcagaggatcta
aatctgctgattgccaagaacactcggcttgagatctatgtggtcacagcagaggggctg
cggcctgtcaaggaggtgggcatgtatggcaagactgctgtcatggagctgttccgccca
aagggtgagagcaaggatttattgttcatcctgacagccaagtataatgcatgtatcctt
gagtacaaacagaatggggacagcattgatattatcacccgtgcccatggaaacgtgcag
gatcgtattgggcgtccctcggagacaggtataattggcatcattgacccagagtgccgg
atgattggcctgcggctctatgatggcctcttcaaggtcattcctctggaccgggagaac
aaggagttaaaggcttttaacatccgcctggaagagctccaagtcatcgatgtgaaattt
ctctatggctgtcaggctccgaccatctgcttcgtctaccaggaccctcagggtcgccac
gtcaagacatatgaggtgtccctgcgagaaaaggagtttaacaaaggtccttggaaacag
gagaacgtagaggctgaagcctccatggtcattgcagtgccggaaccttttggaggagcg
atcatcattgggcaggagtccatcacctatcacaatggagacaaatatctagctatagct
ccacctatcatcaagcaaagtacaattgtgtgccacaatcgtgtggatcccaatgggtcc
cgatacttgctgggggacatggagggacgtctcttcatgctgctcctggagaaggaggaa
cagatggatggcactgtcactttgaaggacctgcgagtggaactgcttggagagacatct
attgcagagtgcttgacctacctggacaacggtgttgtgtttgttggctctcggcttggg
gattcccagcttgtgaagctcaacgtggacagcaatgaacagggctcctacgtagtggct
atggagaccttcaccaaccttggtcccatcgtcgacatgtgtgtggtagacctggaaaga
caaggccaagggcagctggtcacgtgctcgggtgcgtttaaagagggttcgctgcggatc
atccggaatggcattgggattcatgagcatgccagcattgacttgccaggaattaaaggc
ctgtggcccctgaggtcagactctcatcgtgagacagacaatacattggtgctgtccttt
gttggccagaccagggttcttatgttaaatggagaggaagtggaagagacagagctgaca
gggtttgtggatgatcagcagactttcttttgtggcaatgtggcccatcagcaattgatc
cagattacctctgcctctgtgagactggtcagtcaggagcccaaagccctggtgagtgag
tggaaagagcccaatgggaagaacatcagtgtggcttcctgcaatagtaaccaggtggtg
gtggctgtgggacgagccctgtattacctggagattagaccccaagagctcaggcagatc
agctgcacagaaatggagcatgaagttgcctgcctggacatcacccctttgggagacact
aatggcatgtccctgctgtgtgctattgggctctggactgatatctccgcccgcatccta
aagctgccttcgtttgaactgctgcacaaagagatgctgggaggagaaatcatccctcgt
tccatcctgatgacgacctttgagagcagccattatcttctgtgtgccctgggggatggg
gctctcttctactttgggctcagccttgagacaggtttgctaagtgaccggaagaaggta
acccttggaacgcagccaactgtcctgaggacttttcgctctttgtccacgaccaatgtg
tttgcctgctctgaccgccccaccgtgatctacagcagtaaccacaagctggtgttctcc
aatgtcaaccttaaggaggtgaactacatgtgtcccctcaactcggatgggtatcctgac
agcctggcattggccaataacagcaccctgacaatcggcacgattgatgagatccagaag
ctgcacatccgcacagttcccctctatgaatcgcccaggaagatctgctaccaagaggta
tcgcagtgtttcggtgtgctctcgagtcgtattgaggtgcaggatgccagtggaggtacc
actgcgctcagacccagtgccagcacgcaggccctgtccagcagcgtgagcaccagcaag
ctgttctccagcagcacagcaccgcatgagacatcctttggagaggaggtggaggtgcac
aacttgctgattatagatcagcacacctttgaagtgcttcatgctcaccaatttctgcaa
aatgaatatgcccttagcctggtctcctgcaagcttggcaaggatccaaacacttacttc
attgtgggcactgccatggtgtatcctgaggaggcagagcccaaacagggccgcattgtt
gtcttccactattctgacgggaaactgcagagcctggcagagaaggaggtgaaaggggct
gtgtattccatggtggagttcaatgggaagctgttagccagcatcaacagcacggtgcgc
ctgtatgagtggacagctgagaaggagctgcgcacagagtgcaaccattacaataacatc
atggcactctacttgaagaccaagggagacttcatccttgtaggagatctgatgcggtct
gtcctgctccttgcatacaagcccatggaaggaaactttgaggagattgcccgggacttc
aatcccaactggatgagtgctgtagagatcttggacgatgacaacttcttgggagcagag
aacgcctttaacctgtttgtatgccagaaagacagtgctgccacaaccgatgaggagcgc
cagcacttgcaagaagtggggctgtcccatctgggagaatttgtcaacgttttctgccac
gggtctctggtcatgcagaacctgggtgagacgtctacaccgacacagggctcagttctc
tttggcacagtcaacggcatgattggactggtaacctcgctgtcggaaagctggtacaac
ctcctgctggacatgcagaacaggctcaacaaagtcatcaagagtgtgggcaagatcgag
cactctttctggagatcatttcacactgaacgcaagacagaaccagctacagggttcatt
gatggtgacttaattgaaagtttcttggacatcagcaggcccaagatgcaggaggtggtg
gcaaacttgcagatcgatgatggcagcggcatgaagagggaggccaccgtagatgacctg
ataaagattgtggaggagctgacccggatccattag
DBGET
integrated database retrieval system
