Struthio camelus australis (South African ostrich): 104140504
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Entry
104140504 CDS
T08512
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104140504 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scam00536
]
104140504 (COL11A1)
Glycosaminoglycan binding proteins [BR:
scam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104140504 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
DUF4763
Motif
Other DBs
NCBI-GeneID:
104140504
NCBI-ProteinID:
XP_009667622
LinkDB
All DBs
Position
Unknown
AA seq
1843 aa
AA seq
DB search
MVGDWTEPVDVLKALEFHNSPEGVSRTAGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLF
PGGDFPEDFSILMTVKPKKGIQSFLLSVYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPED
YPLFRTVNIADGKWHRVAISVEKKSVTMIVDCNKKTTKPLERSDKTIVDTNGITVFGTRI
LDEEVFEGEIQQLLIVADPRAAYDYCEHYSPDCDSPVPNAAQAQDPQVDEYTPEDFIEYD
YEYGDADYKETDSVTEGPPLFEETVAQTEKKKAKAKKKKRTVAASSKDKPQKATTKKSEK
FASRKKKSYQAATKGKLGVKANVVDEFQEYSIAETDYGLQTEAPSRTTEANEQNPVEEVF
AEEYITGEDYDKKTEETEYGSRGVNLSESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEF
GPGVPAETDITETSVTGHGAYGEKGQKGEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGP
VGPPGDPGERGPPGRPGLPGADGLAGPPGTMLMLPFRFGGDGEKGPTVSAQEAQAQAILQ
QARIAMRGPPGPMGLTGRPGPVGGPGAAGAKGESGEPGPQGPRGIQGAPGPSGKAGKRGR
PGADEVNFLSLIHVFDLHVFHSGDRGFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGLRGE
DGEVGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAGVDGPSGPKGNMGPQGEPGPPGQQGI
PGPQGLPGPQGPIGPPGEKGPQGKPGLPGLPGSDGPPGHPGKEGQSGEKGALGPPGPQGP
IGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQPGPRGEDGPEGP
KGRAGPSGDPGAAGPAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGK
PGPRGQRGPTGPRGSRGPRGPTGKPGLKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGP
PGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE
QGLPGAAGKEGAKGDPGPQGIPGKDGPAGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGP
VGSPGERGAAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGP
AGPSGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQ
QGMFGQKGDEGPRGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGA
DGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGESGTSGPKGERGEKGEAGPPGAAGPPGA
KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGEKGEDGDPGQPGPPGPSGEAGP
PGPPGKRGPPGATGAEGRQGEKGAKGEPGAEGAPGKTGPVGPQGPAGKPGPEGLRGIXXX
XXXXXXXXXXGPVGEQGLPGAPGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGP
PGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGPPGPPGLPGPQGPKGSKGSSGPAGQ
KGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPDYMLSDAGDNILDYSDGMEEIFGSL
NSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPDGEYWIDPNQGCSGDSFKVYCNFTA
GGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLS
ASARQNFTYNCHQSVAWHDASSDSYDKALRFLGSNDEEMSYDNNPYIKALHDGCASRKGY
AKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggttggggactggactgaaccagttgatgtgctaaaagcattagaatttcacaattca
ccagaaggagtatcaagaacagcaggattttgcacaaatagaagggattcaaaaggatca
gatgttgcctacagagtttcaaaaactgcacagctcagtgccccaacaaagcagctgttc
ccaggtggagactttccagaagatttttcaatattaatgacagtaaaacctaaaaagggt
atccaatccttcctcctttctgtctacaatgaacaaggaattcagcaagtaggtgttgaa
gttggtagatcccctgtcttcctatttgaagaccaaaatggaaaacctgccccagaagac
tatcctcttttcagaacagtcaacattgctgatggcaagtggcatcgagtagctattagt
gtggagaagaaaagcgttaccatgattgttgactgtaacaaaaaaaccacaaaaccactt
gaaagaagtgacaaaacaattgtggacaccaatggcatcactgtatttggaaccaggatt
ctggatgaagaagtttttgagggtgaaatccagcagctgttgattgtagctgaccccaga
gctgcatatgactattgcgagcattatagcccagactgtgattccccagtgcccaatgct
gctcaggctcaagatcctcaagttgatgagtatacaccagaagattttatcgaatatgac
tatgagtatggggatgcagattataaagaaactgactctgtaacagagggacccccacta
ttcgaggagacagtagcacaaacagagaaaaagaaagccaaggccaaaaagaagaagagg
acagtggccgctagctcaaaggacaaaccccaaaaggccacaacaaaaaaatctgaaaaa
tttgcatccaggaagaagaaaagttatcaagcagcaacaaaaggcaaactaggggtaaag
gcaaacgttgtcgatgaattccaagaatatagcatagctgaaactgactacggtttgcag
acagaggcaccctccagaacaactgaagcaaatgagcaaaatcctgttgaagaagtattt
gctgaagaatacataactggagaggattatgataaaaaaactgaggaaactgaatatgga
agcagaggagtaaacctcagtgaatctgatcttctggtagatggcgatttaggcgaatat
gatttttatgaatataaagaatatgaagagaaaccaactgattccactaatgaggagttt
ggtccaggtgttcctgcagagactgatatcacagaaacaagcgtaactggacatggagct
tatggagagaaaggacaaaagggagaaccagctgtgattgaacctggaatgctcattgaa
ggaccaccgggaccaagaggacctgctggtcttacaggtcccccaggtttacaaggtcct
gttggccctccaggtgaccctggtgaaaggggtccacctggtcgccctggtctccctggt
gctgacggtttagcaggtccgccaggtaccatgttaatgttgccgttccgctttggtgga
gatggtgaaaagggtccaacagtctcagctcaggaagctcaagcacaagctattcttcag
caagctaggattgctatgagagggccacctggtcccatgggactcactggaagaccaggt
cctgtgggtggacctggagcagcaggtgctaaaggtgaaagtggtgagccaggtccccag
ggtcctcgtggtattcaaggtgcccctggtccaagtgggaaagctggcaaaaggggacgc
cctggtgctgatgaagtaaattttctaagtttgatccatgtgtttgatctccatgtgttt
cattcaggtgacagaggatttgatggtcttcctggcctccctggtgacaaaggtaacagg
ggagaccgtggcccgcagggacctcctggcttacctggtgaagacggattaagaggagaa
gatggagaagttggaccaagaggtctcccaggtgaagctggtccacggggattactaggc
cccagaggtacacctggtccccctggacaacctggcattgcaggtgttgatggcccctca
ggcccaaaaggaaacatgggtcctcaaggggaaccaggacctcctggtcaacaaggaatc
ccgggcccacaagggcttcctggtccacaaggtcctattggacctcctggtgaaaaagga
cctcaaggaaagcctggccttcctggccttcctggttctgatggacctcctggtcatcct
ggtaaagaaggtcagtctggagagaaaggtgcattggggcctccaggtcctcagggtcca
attggctatccaggtcctcgtggggtaaagggagctgatggtgtccgtggtctcaaaggc
tccaaaggtgaaaagggtgaagatggttttccaggatttaaaggtgacatgggccttaaa
ggtgaccggggagaagttggccagccaggtccacggggagaagatggcccagaaggtcca
aaaggtcgagcaggtccgtctggggacccaggtgctgctggtccagcaggagaaaagggt
aagcttggtgtaccaggattgccaggatatccaggaagacaaggtccaaaggggtcaact
ggtttcccaggatttccaggtgccaatggagagaaaggtgcaaggggtttacatggcaaa
ccaggcccaagaggacagcgaggaccaacaggtccgagaggctcaagaggtcccagaggt
cccactgggaaaccaggtctgaagggtactgcaggcaatgatggtcctcctggcccacca
ggtgaaaggggaccacaagggcctcagggacctgttggattccctggaccaaaaggacct
ccagggccacctggaaaagatgggttgcctgggcacccaggacagcggggtgaaactggc
ttccaaggaaaaacgggtcctcctggtcctggtggtgttgttggccctcagggtcctact
ggtgaaactggcccaattggggaaagaggtcatccaggtcctcctggtccaccgggggaa
caaggcctcccaggtgctgcaggaaaagaaggtgctaagggtgacccgggccctcaaggt
attcctgggaaagatggaccagctggtcttcgaggtttccctggagaaagaggccttcca
ggagctcagggtccagctggtctgaaaggaggggaaggcccacaaggcccgcctggccca
gttggttcaccaggggaacgtggagcagcaggcactgctggcccaattggtctacctggt
cgtcccggaccgcagggtcctccaggccctgcaggggagaagggtgctcctggtgaaaaa
ggtcctcaaggtccagctggacgtgatggagtacagggtcctgtaggacttcctggtcct
gctggtccaagtggttctcctggagaagatggtgacaagggtgaaattggtgaaccaggt
cagaaaggtagtaaaggcgacaagggagaaaacggtcctccaggtccaccaggtcttcag
ggtcctgttggtgcccccggtatagctggcggtgatggggaaccaggcccaagaggtcag
caagggatgtttgggcagaaaggtgatgaaggtcctcgaggtttccctggtcctccaggc
cctattggtttacagggtctacctggcccaccaggtgaaaagggtgaaaatggcgatgtg
ggcccaatgggtccacctggccctccaggtccaagaggtccccagggtcctaatggagct
gatggtcctcaaggccccccaggctcaattggttctgttggaggtgttggtgaaaagggt
gaacctggagaagctggtaaccctggacctcctggagaatctgggacatctggtccaaaa
ggtgaaagaggagaaaaaggcgaggctggtccacctggagcagctggaccaccaggtgct
aaaggacctccaggcgatgatgggcctaagggtaatccaggcccggttggttttcctgga
gatcctggtccccctggtgaacctggtcctgctggtcaagacggtgttggtggagagaag
ggtgaagatggtgatcctggtcaacctggtccaccaggtccttcaggtgaagctggccca
cctggtccacctggaaagagaggacctcctggagccactggtgctgaaggcagacaaggt
gaaaaaggtgcaaagggtgaacctggtgcagaaggcgctcctggaaaaacaggtccagtt
ggtcctcagggacctgcaggaaagcctggcccagagggtctccgaggcattcnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnctggccctgtgggagaacaaggtctacctgga
gcaccaggtcaggatggccctcctggacctctgggtccacctggcttgcctggtttgaaa
ggagatccaggttccaaaggagagaagggacatcctggtttgattgggctgattggacct
ccaggagaacagggtgaaaagggcgacaggggtcttcctggcccacagggatctcctgga
gccaagggtgatgcaggaatttccggtcctgctggtccactcggaccccctggtcctcct
ggtttacctggtccccaaggtcccaaaggttccaaaggatccagtggccctgctggtcaa
aagggtgacagtggtttacctggtccacctggtcctccaggacctccaggtgaggtaatc
caaccactgccaatccagtcacccaaaaagacaagaagatctcctgattacatgttatcc
gatgctggtgataatattctggattattctgatggcatggaggagatctttggttcactg
aactcactgaagcaagacattgaacatatgaagtatccaatgggcacacagaacaaccca
gcccgaacttgcaaagatctgcaactctgccacccagacttcccagacggggaatattgg
attgatcctaaccagggctgttctggagactccttcaaagtgtactgcaatttcacagcc
ggtggggaaacttgcatctatccagataagaaatctgaaggagttagaatttcatcatgg
ccaaaggagaatccaggatcttggtttagtgaatttaagagaggcaaactgctttcttat
ttggatgttgaaggcaattccattaatatggtccaaatgacattcctgaaactactgagt
gcctctgccagacaaaatttcacttacaattgtcatcagtcagtagcttggcatgatgca
tcatctgacagctatgacaaagcactgagattcttaggatcaaatgatgaagagatgtcc
tatgacaacaatccttacattaaagctcttcacgatggctgtgcatcaagaaagggctat
gcaaagacggtgattgaaatcaacacacctaaaatagaccaagtgcctattgttgatgtg
atgatcaatgactttggtgatcagaaccagaagtttggatttgaggtcggtcctgtctgt
ttccttggttaa
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