KEGG   Struthio camelus australis (South African ostrich): 104140916
Entry
104140916         CDS       T08512                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
scam  Struthio camelus australis (South African ostrich)
Pathway
scam03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:scam00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104140916 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:scam03041]
    104140916 (SNRNP40)
Spliceosome [BR:scam03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104140916 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104140916 (SNRNP40)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 WDR54 WD40_like Beta-prop_HPS5 Beta-prop_Nup120_160 PROPPIN Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 104140916
NCBI-ProteinID: XP_009668229
Ensembl: ENSSCUG00000002400
LinkDB
Position
Unknown
AA seq 280 aa
VNTRASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWD
SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVL
AVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDN
TVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSR
RILYKLPGHAGSVNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq 843 nt   +upstreamnt  +downstreamnt
gtcaacacgcgcgcctctgccggcttcgacaggctcatcctgctgtggaacgtctatggg
gactgtgataattatgccaccctgaagggacacagtggagcggttatggagttgcactat
aacacagatggcagcatgctcttctcagcatccacagacaaaacagtggcagtgtgggat
agtgagacgggagagagagtaaagagactgaagggccatacgtcattcgttaactcctgt
tacccagcaaggcgtggaccccaacttgtctgtacgggtagtgatgatgggacagtgaag
ctgtgggatatcaggaaaaaagctgctgtccaaacatttcagaacacttaccaagtcttg
gctgtgactttcaatgacaccagtgatcaaatcatatcggggggcattgacaatgatatt
aaggtatgggaccttcgccagaacaagctcacttacacgatgagaggacacgcggactct
gtgacaggcctcagtctgagttcagaaggctcttacctgctctctaatgcaatggacaac
acagttcgtatctgggatgtacgaccgtttgcacctaaagagagatgtgtaaagatattc
caggggaacgtgcataattttgaaaagaatcttctgagatgttcttggtccccagatggg
agtaaaatagcagggggatcagcagacaggtttgtctatgtgtgggacaccacatccagg
aggattttgtacaagctgccaggccacgccggctccgtgaatgaactggctttccatccg
gaggaacccattatactctctgcatccagcgacaaaaggctatatatgggggagatccag
tga

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