Struthio camelus australis (South African ostrich): 104142951
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Entry
104142951 CDS
T08512
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03008
Ribosome biogenesis in eukaryotes
scam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104142951 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
104142951 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scam03021
]
104142951 (XRN2)
03019 Messenger RNA biogenesis [BR:
scam03019
]
104142951 (XRN2)
03009 Ribosome biogenesis [BR:
scam03009
]
104142951 (XRN2)
03016 Transfer RNA biogenesis [BR:
scam03016
]
104142951 (XRN2)
Transcription machinery [BR:
scam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104142951 (XRN2)
Messenger RNA biogenesis [BR:
scam03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104142951 (XRN2)
Ribosome biogenesis [BR:
scam03009
]
Eukaryotic type
Pre-60S particles
RNases
104142951 (XRN2)
Transfer RNA biogenesis [BR:
scam03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104142951 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
104142951
NCBI-ProteinID:
XP_009671457
Ensembl:
ENSSCUG00000006554
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MVRLCLLPCTCMEAKECNGVKASIDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPK
NEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAEEK
QKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIADRLNSDPGWKNLT
VILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIR
EEFKPNKPKPCSLCNQMGHEVKDCQGLPREKQGKHDQFADSLPTSEQEFIFIRLCVLREY
LERELTMASLPFTFDFERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVH
KTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKEKRKRMKRDHPSF
IPGGQFSPQALGNRSSPQAISNPRQTAFEMRMHDRQNSTTSSPNTSLTSDGTPSPAGGIK
RKAEDSDSEPEPEDNIRLWEAGWKQRYYKNKFDVDASDEKFRRKVVQSYVEGLCWVLRYY
YQGCASWNWYYPFHYAPFASDFDGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPT
WRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEE
NRRNSLGGDVLFVGKHHPLCDFIVEQYKSKNDEPVDIPPELCHGIQGKLTLNDNAVLPDQ
TVESPVPMLRDLTQNSAISISFKDPQFDEDFVFKATVLPGAKKPPPVLKPGDWEKTNNDG
RPWRPQLGFNRDRKPVHLDQSAFRTLGHWMPAMYANAVPLGAYGNPYSRPLLSGQQQIPK
LLSNLRPQDSWRGPTPLFQQSPQRSAGAAPLLAWNRMLPAQSQYQPSQYQGLGGPMSYPQ
RPEDRMDRGRQAYGPGRPYPLPPPSGRYS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggttcgtctttgtcttctcccttgcacctgcatggaggctaaagagtgcaatggtgtc
aaggcctcaattgataccagcaaacctaatcccaatgaggtggagtttgataatctgtat
ttggatatgaatggtataatccacccttgtacacatccagaagacaagccagcacccaaa
aatgaagatgaaatgatggttgcgatttttgagtatattgacaggatcttcaacattgta
agaccaaggcgacttctctacatggctattgatggagtagctccacgtgcaaaaatgaat
cagcaacgatcaagaagattccgagcgtcaaaggagggaatggaagctgcggaagagaag
caaaaaataagacaagaaattctggcaaaaggtggcattcttcctccagaagaagtgaaa
gagagatttgacagcaactgcattactccaggaactgagtttatggataatcttgctaaa
tgtctccgctattacattgctgaccgtttaaacagtgatccaggttggaaaaatttgaca
gttattttgtctgatgctagtgctcctggcgaaggtgaacataaaatcatggattatatt
agaagacaaagagctcaaccaaaccatgacccaaacactcatcattgtctgtgtggggct
gatgctgatctaattatgcttggattagctacacatgagccaaatttcactataattagg
gaagagtttaaaccaaataaacccaagccatgtagtctttgtaaccagatgggtcatgaa
gttaaagattgccaaggcttacccagagaaaaacaaggcaagcacgatcagtttgcagac
agtcttcctacctctgaacaagaatttatcttcattcgattgtgtgttttgcgagagtat
ttggaaagagaactcactatggccagtttgcctttcacttttgattttgagagaagcatc
gatgactgggtctttatgtgcttctttgtgggaaatgactttcttcctcatctgccatct
ttggagatcagggaaggagcaattgatcgcttggttaacatatataaaaatgtggtgcac
aaaacgggggggtacctcacagaaagtggttttgtcaacctacagcgagtccagatgatc
atgttagctgtcggagaagtcgaagatagtattttcaaaaagagaaaagatgacgatgac
aacttcaaaagacggcaaaaagaaaaaagaaaaagaatgaagcgagatcatccttctttt
attcctggaggacagttttcccctcaagctctaggaaatcgatctagtcctcaggcaatc
agcaaccctaggcagactgcttttgaaatgagaatgcatgaccggcagaattctacaact
tcatctccaaataccagtctcacttctgatggcaccccatccccagcaggaggaattaag
cgaaaagctgaagatagtgacagtgaacctgagccagaggataatatcaggttatgggaa
gctggttggaaacaacgctattataaaaataaatttgatgttgatgcatctgatgagaaa
ttccgacgtaaagttgtacagtcctatgttgaagggctttgctgggttctcagatactat
tatcagggctgtgcatcctggaactggtattacccttttcactatgctccgtttgcttct
gactttgatggcattgcagatatgccctcagattttgagaagggctcaaaaccgttcaag
cctcttgaacaacttatgggagtatttccagctgcaagtggaaattttctgcccccaact
tggaggaagctcatgacagatccggaatcaagcataattgacttctaccctgaagacttt
gctattgatttaaacgggaagaaatacgcttggcaaggtgttgctttgttgccgtttgtt
gatgagcgacgtcttagagccgccctggaagaagtctatcctgacctcactcctgaagaa
aatagaagaaatagccttggcggtgatgttctctttgttgggaagcatcatccactttgt
gattttattgtggagcaatacaagtccaaaaatgacgagccagtggatattccaccagaa
ctgtgccatggaatccagggaaaacttacgctgaatgataatgcagttcttccagatcag
acagtggagtctcccgtgccgatgttacgtgatcttacacaaaattctgcaatcagtatc
tctttcaaagatccacaatttgatgaagactttgttttcaaggctacagtgttacctggt
gcaaagaaacctcctccagtccttaagccaggagactgggaaaaaaccaacaatgatggt
aggccttggagaccacagcttggttttaatcgagacagaaagccagttcatttggaccag
tcagcatttagaactttagggcattggatgccagccatgtatgccaatgcagtaccactt
ggagcttatgggaacccatacagcaggccgcttctaagtgggcagcagcagattcctaaa
ttgttgtcaaatcttaggccccaagactcttggcgaggtccgacacctttgtttcagcag
tcaccgcaaagaagcgctggggctgctccccttctcgcttggaaccgcatgctaccagcc
caaagtcagtaccagccaagtcagtaccaaggactaggcggaccaatgagttacccacag
agacctgaagatcgtatggacaggggaagacaggcatatggccccgggaggccctacccg
ttaccacctccctcaggaagatacagctga
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