Struthio camelus australis (South African ostrich): 104144786
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Entry
104144786 CDS
T08512
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03015
mRNA surveillance pathway
scam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104144786 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
104144786 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scam03019
]
104144786 (PABPC1)
03041 Spliceosome [BR:
scam03041
]
104144786 (PABPC1)
Messenger RNA biogenesis [BR:
scam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104144786 (PABPC1)
mRNA cycle factors
Stress granule specific factors
104144786 (PABPC1)
Spliceosome [BR:
scam03041
]
Complex C
Other components
Complex C specific factors
104144786 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_10
RRM_occluded
RRM_7
RBD_RDR6
RRM_3
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
104144786
NCBI-ProteinID:
XP_009674261
Ensembl:
ENSSCUG00000009462
LinkDB
All DBs
Position
Unknown
AA seq
565 aa
AA seq
DB search
MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV
CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT
NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM
NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR
KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK
EERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQLAQL
RPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMG
PRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLA
SAPPQEQKQMLGERLFPLIQNMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAV
AVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgatgtcattaaaggcaaaccagtgcgcatcatgtggtctcaacgcgatcca
tctctacgcaaaagtggcgtaggaaacatcttcatcaaaaacttggacaaatcaattgat
aacaaagctttgtatgacacattttctgcttttggaaatattctgtcttgtaaggtggta
tgtgatgaaaatggatccaagggttatggatttgtacattttgagacacaagaagctgca
gaaagagctattgaaaaaatgaatggtatgctgcttaatgaccgcaaagtatttgttgga
aggtttaaatcccgcaaggaacgtgaggcagagcttggagccagagcaaaagaattcacc
aatgtttacatcaagaattttggagaagacatggatgatgaaagacttaaggaactcttt
ggcaagtttggtcctgccttaagtgtgaaagttatgaccgatgagagtggaaaatccaaa
ggctttggcttcgttagttttgaaagacatgaagatgcccagaaagctgtagatgagatg
aatggaaaagagctcaatgggaaacaaatctatgttggccgggctcagaaaaaggtggaa
agacagacggagctcaagcgcaagtttgaacaaatgaaacaggacaggatcaccagatac
cagggtgtaaacctttacgtgaaaaatctcgatgatgggattgatgatgaacgtcttcga
aaagaattctctccatttggcacaatcactagtgcaaaggtcatgatggaaggtggccgc
agcaaaggatttgggtttgtatgcttttcttcaccagaagaagccaccaaagctgtcaca
gagatgaatggtagaattgtggctactaaaccattatatgtagcactagcccagcgtaaa
gaggagcgccaggctcatcttaccaaccagtatatgcagagaatggcaagtgtaagagca
gttcctaatcctgtaatcaacccctaccaaccagcacctccttcaggttacttcatggca
gctatcccacagactcaaaaccgtgctgcatactatcccactagtcaacttgctcagctc
agaccaagtcctcgctggactgctcagggtgccagacctcatccgttccaaaacatgcct
ggtgctatccgcccagcagcacccagaccaccatttagtaccatgagaccagcttcttca
caagttccacgagtcatgtcaacacaacgtgttgctaatacatcaacacaaacaatgggt
ccacgtcctgcggcagcagctactgcagctactcctgctgtacgcacagtaccacagtac
aaatatgctgcaggtgttcgtaatcctcagcagcatcttaatacacagccacaggttgct
atgcagcagcctgctgtccatgtgcaaggtcaggaacccttgactgcttccatgttggct
tctgcccccccacaagaacaaaagcagatgttaggtgaacgtctatttcctcttattcaa
aacatgcaccctactctggcgggtaagatcactggcatgttgttggagattgacaactct
gaactccttcacatgctcgagtctcctgagtctcttcgttcgaaggttgatgaagctgta
gccgtactacaagcccaccaagctaaagaggctgctcaaaaggcagttaataatcccact
ggggtcccaagtgtttaa
DBGET
integrated database retrieval system
