Struthio camelus australis (South African ostrich): 104146009
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Entry
104146009 CDS
T08512
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03020
RNA polymerase
scam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104146009
09124 Replication and repair
03420 Nucleotide excision repair
104146009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scam03021
]
104146009
03400 DNA repair and recombination proteins [BR:
scam03400
]
104146009
Enzymes [BR:
scam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104146009
Transcription machinery [BR:
scam03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104146009
DNA repair and recombination proteins [BR:
scam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104146009
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_R
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
104146009
NCBI-ProteinID:
XP_009676200
Ensembl:
ENSSCUG00000000225
LinkDB
All DBs
Position
Unknown
AA seq
1607 aa
AA seq
DB search
SPNPFSPPPPSQKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT
ECPGHFGHIELAKPVFHVGFLGKTMKILRCVCFFCSKLLVDSNNPKIKDILGKSKGQPKK
RLTHVYDLCKGKNICEGGEEMDHKFGVEQPEGDEDLTKEKVERHMCDGDIVIFNRQPTLH
KMSMMGHRVRILPWSTFRLNLRYPGAPRPALFDTKVIVENGELIMGILCKKSLGTSAGSL
VHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQD
VIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVS
GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLT
PTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYG
EDGLAGESVEFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNEL
EREFEKMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEG
VKELSRKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEI
ESKFNQAIAHSGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISK
KPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEW
VNVYYEMPDFDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA
EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP
QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE
AVRXLGRELYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFE
ETVDVLMEAAAHGESDPMKGVSENIMLGQLAPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPN
YSPTSPSYSPPSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPPSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPPSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
NT seq
4822 nt
NT seq
+upstream
nt +downstream
nt
tttcccctaacccgttttctccccccccgccttcgcagaaacgcatgtcggtgaccgaag
ggggcatcaagtaccccgagaccacggagggggggcgccccaagctggggggcctcatgg
acccccgccagggcgtcatcgagaggacggggcgctgccagacctgcgcgggtaacatga
ccgagtgcccgggccactttggccacatcgagctggccaagcccgtcttccacgtgggct
ttttgggcaaaaccatgaagatcttgcgctgcgtttgcttcttctgctccaagctcctgg
tggactcgaacaaccccaaaatcaaggacatcctgggcaagtccaaggggcagcccaaga
agcgcctgacgcacgtctacgacctctgcaaaggcaagaacatctgcgagggcggcgagg
agatggaccacaagttcggtgtggagcagcccgagggtgacgaggacctcaccaaggaga
aggtggagcgacacatgtgcgacggggacatcgtcatcttcaaccgccagcccacgctgc
acaagatgtccatgatgggccaccgggtccgcatcctgccctggtccaccttccgcctca
acctcaggtaccccggtgccccccgacctgccctgttcgacaccaaggtgatcgtggaga
acggggagctcatcatgggcatcctgtgcaagaagtcgctgggcacctcggcgggctccc
tggtgcacatctcctacctggagatgggccacgacaccacccgcctcttctacagcaaca
tccagaccgtcatcaacaactggctcctcattgagggccacacaatcggcattggggact
ccattgccgacgccaagacgtaccaggacatccagaacaccatcaagaaggccaagcagg
atgtcattgaggtcattgagaaggcgcacaacaacgagctggagccgacgccagggaaca
cgctgcggcagaccttcgagaaccaggtgaaccgcatcctcaacgatgcccgtgacaaga
ccggctcctctgcccagaagtcactctcggagtacaacaacttcaagtccatggtggtgt
cgggtgccaaagggtccaagatcaacatctcccaggtcatcgcggtggtggggcagcaga
acgtggagggcaagcgcatccccttcggcttcaagcaccgcacgctgccccacttcatca
aggacgactacggccccgagagccgcggcttcgtggagaactcctacctggccgggctca
cccccaccgagttcttcttccacgccatgggtggccgcgagggcctcatcgacaccgccg
tcaagacagctgagacggggtacatccagcggcgcctgatcaagtcgatggagtcggtga
tggtgaagtacgacgccaccgtgcgcaactccatcaaccaggtggtgcagctgcgctacg
gcgaggacgggctggcgggcgagagcgtcgagttccaaaacctcgccaccctcaagccct
ccaacaaggccttcgagaagaagttcaagttcgactacaccaacgagcgggcgctacggc
ggacgctgcaggaggagatggtcaaggacatcctgagcaacgcccacatccagaacgagc
tggagcgcgagttcgagaagatgcgggaggaccgcgaggtgctgcgcgtcatcttcccca
ccggcgacagcaaggtggtgctgccctgtaacctgctgcgcatgatctggaacgcccaga
agatctttcacatcaactcgcgcctcccctcggacctgcaccctgtcaaggtggtggaag
gggtgaaggagctgagccggaagctggtgatcgtcaacggggacgacccgctgagccggc
aggcgcaggagaacgccacgctgctcttcaacatccacctgcgctccacgctctgcagcc
gccgcatggtggaggagttccgcctcagcggcgaggccttcgactggctcctgggcgaga
tcgagtccaagttcaaccaggccatcgcccactccggggagatggtgggtgccctggcag
cccagtccctgggtgagccagccacccagatgaccctcaacaccttccactacgccggtg
tctcggccaagaacgtcaccctgggtgtcccccgcctcaaggagctcatcaacatctcca
agaagcccaagacaccttcgctcactgtcttcctcctgggccagagcgcccgtgacgctg
agcgcgccaaggacatcctgtgccgcctggagcacacgacgttgcggaaggtgacagcca
acacggccatctactacgaccccaacccgcagagcacggtggtggccgaggaccaggagt
gggtcaacgtctactacgagatgcccgactttgacgtgagccgcatctcgccctggctgc
tccgtgttgagctcgaccgcaagcacatgacggaccgcaagctcaccatggagcagatcg
ctgagaagatcaatgctggctttggggacgacctgaactgcatcttcaacgacgacaatg
ccgagaagctggtgctgcggatccgcatcatgaacagcgatgagaacaagatgcaggagg
aggaggaagtggtggacaagatggatgatgacgtcttcctgcggtgcatcgagtccaaca
tgctgacagacatgacgctgcagggcatcgagcagatcagcaaggtgtacatgcacctgc
cgcagacggacaacaagaagaagatcatcatcacggaggacggggagttcaaggcgctgc
aggagtggatcctggagacggacggcgtcagcctcatgcgggtgctgagcgagaaggacg
tggaccccgtgcgcaccacctccaacgacatcgtggagatctttaccgtgctgggcatcg
aggcggtgcggnccctcgggcgggagctctaccacgtcatctccttcgatggctcctacg
tcaactaccggcacctggcgctgctctgtgacaccatgacatcccgtggccacctcatgg
ccatcacccgccacggcgtcaaccgccaggacaccgggcccctcatgaagtgctcctttg
aggagacggtggacgtgctgatggaggcggcggcgcacggcgagagcgaccccatgaagg
gggtgtcggagaacatcatgctggggcagctggcgcccacatctccgagctacagcccta
cttcgcccagctacagcccaacatctccgagctacagccctacttcgcccagctacagcc
caacatctccgagctacagccctacttcgcccagctacagcccgacgtctcccagttaca
gccccacctcgcccaactacagccccacgtctccgagttacagccccacctcccccagct
acagccctacttcgcccagctacagcccgacgtctcccagttacagccccacctcgccca
actacagccccacgtctccgagttacagccccccctcccccagctacagccctacttcgc
ccagctacagcccaacatctccgagctacagccctacttcgcccagctacagcccaacat
ctccgagctacagccctacttcgcccagctacagcccaacatctccgagctacagcccta
cttcgcccagctacagcccaacatctccgagctacagccctacttcgcccagctacagcc
caacatctccgagctacagccctacttcgcccagctacagcccgacgtctcccagttaca
gccccacctcgcccaactacagccccacgtctccgagttacagccccacctcccccagct
acagccctacttcgcccagctacagcccgacgtctcccagttacagccccacctcgccca
actacagccccacgtctccgagttacagccccccctcccccagctacagccctacttcgc
ccagctacagcccaacatctccgagctacagccctacttcgcccagctacagcccaacat
ctccgagctacagccctacttcgcccagctacagcccaacatctccgagctacagcccta
cttcgcccagctacagcccaacatctccgagctacagccctacttcgcccagctacagcc
caacatctccgagctacagccctacttcgcccagctacagcccgacgtctcccagttaca
gccccacctcgcccaactacagccccacgtctccgagttacagccccacctcccccagct
acagccctacttcgcccagctacagcccgacgtctcccagttacagccccacctcgccca
actacagccccacgtctccgagttacagccccccctcccccagctacagccctacttcgc
ccagctacagcccaacatctccgagctacagccctacttcgcccagctacagcccaacat
ctccgagctacagccctacttcgcccagctacagcccaacatctccgagctacagcccta
cttcgcccagctacagcccaacatctccgagctacagccctacttcgcccagctacagcc
caacatctccgagctacagccctacttcgcccagctacagcccgacgtctcccagttaca
gccccacctcgcccaactacagccccacgtctccgagttacagccccacctcccccagct
acagccctacttcgcccagctacagcccgaccagcccaagctacagccctacttcaccta
gctacagcccgacatctcccagctacagtcccacctcgcccagctacagcccgacatctc
ccagttacagcccaaccagcccaagttacagccctacttcacccagctacagcccgacct
ctcccagctacagtcccacctc
DBGET
integrated database retrieval system
