Struthio camelus australis (South African ostrich): 104147197
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Entry
104147197 CDS
T08512
Symbol
CNOT1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104147197 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scam03019
]
104147197 (CNOT1)
Messenger RNA biogenesis [BR:
scam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104147197 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104147197 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104147197
NCBI-ProteinID:
XP_009677994
Ensembl:
ENSSCUG00000002895
LinkDB
All DBs
Position
Unknown
AA seq
2373 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFTQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLQIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEGYLKGXLYVVPFVAKVLESSVRSVVFRPPNPWTMAIM
NVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPKKDV
KQPEELPPITTTTASTTPATNTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTIPLF
QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHH
MMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNCELA
CCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGG
VDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQHL
QSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLLLR
YRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYD
LHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGNAP
EGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLY
HSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAA
NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQS
EFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELIS
HRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLL
HDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPR
ILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVLYVG
TQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHY
FSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFV
HCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7122 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacaacatattgtgaatcggcacggt
cctgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatccattgcac
tatcagaagagtctaaagccttcgccccacttatttacccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagacttcatgcaa
gaagtcggctatggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttggggatgatggctcgaact
cattcggggttgacggatggcattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagtgatggaacacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaagagctgaatcctagtttggacttcaaagtagtaacctatgag
ttggatcatccaggatttcagattcgtgacagcaagggcttgcagattgtagtgtttggg
atccagagagggctaggcatggaggtctttcccgttaatgccatatacagaccttggaaa
catgcagagggccagctctccttcattcagcattccctcataaaccctgacatcttctgt
tttgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgcaacatggaagagcctggatttgattgaatctctgttacgattg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcccatcaagcactgc
ccagatatgttggtattggccttattgcagatcaacacttcctggcataccttgcgccat
gaactcatctccacgctcatgccaattttccttggcaatcatcccaactctgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcgattcgccagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggcttggctccagaaaaagatcagcccaaaagt
gctcagcttcctccggaaaccttggcaactatgttggcttgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagctaactgcagtaatgtc
atgaacaaggctagacagccaccacctggagtcatgccaaaaggccgtccacctagtgct
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcatccctt
agtttaggcggctcagctgctcctcatacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcatttccccctctttccacccag
aaccagacaacgggtttcagtggcattggaggactctcttcgcagcttccagtaggtggt
cttaccacgggtagcctgactggtataggaactggggcccttggcctccctgcagtgaac
aatgatccattcgtgcaaaggaaactgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctactttcagcgtatttataaccatccacca
catccaaccatgtctgtagatgaggtgttagagatgctacagagatttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaatatcgt
ttttttccccaatacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttacatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttacaggagtacatagaatatgggcagcagtccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggcc
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaactaccaccactgttgcgaaaaccattacaatcactcgtccaactggagtc
agcttcaagaaggatgtgccgccttccattaatactactaacatagatacactgttagta
gcgacagatcagactgagagaattgtggaacctccagagaatgttcaagaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacaaaaggttgaggaactgaaggaa
acagtgaaagaagagttcatgccttgggtatcgcagtatcttgtcatgaaaagagtcagt
attgagccaaactttcacagcttatattccaacttccttgacactcttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctcctgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaatcttggtcattggctggga
atgattacattggctaaaaataagcccatcttgcacacggatttggatgtgaaatcactg
cttctggaaggatatcttaagggancgctttatgtagtgccatttgttgccaaagtctta
gaatccagtgtcaggagtgtggtgttcaggcctccaaacccctggacaatggccattatg
aatgttctagctgagctgcatcaagaacatgatctaaaattgaatctgaagtttgagatt
gaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctggaagtctcctg
aaagataaggatcgattgaaaaatctggatgagcaactgtctgctccaaagaaggatgtg
aagcagccagaagagctaccgcccatcacaacaactactgcttctacaactccagctact
aacacgacttgtacagcaacggtccctccgcagcctcagtacagttaccatgacatcaat
gtctactctttaggagggctggctccacatattaccctaaatccaacgattccactgttt
caggcacacccgcagttgaaacagtgtgtgcggcaggctatagagcgagcagtgcaagag
ctggtccatccagtggtagatcggtccattaagattgccatgactacttgtgagcagata
gtcaggaaggactttgcactggattcggaagagtcaagaatgcgtgtagccgcacatcat
atgatgcggaacctgactgctgggatggccatgattacctgcagggagcctttgctgatg
agcatagctaccaacttgaagaacagttttgctactgcgctgagggcagcctccccacaa
cagagggacatgatggagcaagcagctgcccagttggcgcaggataactgtgagctcgcg
tgttgctttattcagaagacagctgtggaaaaggcgggccctgaaatggataagaggcta
gcgactgaatttgagctcagaaaacatgctagacaagaaggtcgtcggtactgtgatcct
gttgtgttaacttaccaagccgaacggatgccagaacagatcaggttaaaggttggaggt
gtggatccaaaacagctagctgtttacgaagagtttgctcgcaacgtccctggcttcctg
cctaccaatgatttaactcagcctacgggattcttggctcagcctatgaagcaagcctgg
gctacagatgatgtagcgcaaatctatgataagtgtatgacagaactggagcagcacctg
cagtccattccacacacgctggccatgaatcctcaagctcaagctttgcgcagcctcttg
gaggctgtggtagtggcccgtaactcacgtgatgctattgctgcacttggactgctgcag
aaggctgttgagggcttactggatgccacgagtggggcagatgctgacctcctgcttcgc
tatcgtgagtgtcatctgcttgtgctgaaggctctgcaggatggccgtgcatatggttct
ccatggtgtaacaaacaaattactaggtgcctgattgaatgcagagatgagtacaagtac
aatgtagaagcagtagagttactgatccgcaatcacctcgttaacatgcagcagtatgat
cttcacttggctcagtcaatggagaatggcttgaactacatggcagtggcgtttgccatg
cagttggtaaagatcctattggtggatgagagaagcgttgcccacgtaacagaggcagat
ctgtttcacaccattgagacgctcatgaggattaacgctcactccagaggaaatgcgcca
gaaggattaccccagttgatggaagtggtccgatcaaactatgaagcaatgattgaccgt
gctcatggaggtcccaatttcatgatgcattctggaatatcccaagcctctgagtatgat
gacccaccaggcctgagggagaaggcagaatatctactgagggaatgggtgaacctctac
cattcagctgcagcaggccgtgacagtaccaaagctttctctgcgtttgttggacagatg
caccagcaaggaatcctgaaaacagatgacctgatcactcgattttttcgtctttgcact
gaaatgtgtgttgaaatcagctatcgtgctcaggctgagcaacagcataaccctgctgcc
aaccccactatgatccgagccaagtgctaccacaatctggatgcctttgtgcgacttatt
gcactgctagtgaagcactctggggaggcaaccaacacagttacaaagatcaaccttctg
aacaaggttcttggtattgtggtgggagtccttctgcaggaccatgatgtccggcagagt
gaatttcagcagcttccttaccatcgcattttcatcatgttgctgttagaattaaatgct
cctgagcatgtgctggagactatcaacttccagacactcacagccttctgtaacacattt
cacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaactgatctcc
catcggatatttattgcaagaatgctggcacatacaccacagcagaagggttggcctatg
tatgcccagttgttgattgatcttttcaagtacttggctccttttcttagaaatgtggaa
ctcaccaaacctatgcaaattctttacaagggcaccctgcgagtgttgctggtcttgttg
catgatttcccagaatttctttgtgactaccactatgggttctgtgatgtgatcccccct
aactgtatccagctaaggaaccttatcctgagtgccttcccacggaacatgaggcttcca
gaccctttcacccccaacctaaaggtggacatgttaagtgagattaatattgctccacgg
atacttaccaatttcactggagtgatgccacctcagttcaagaaagacttggattcctat
ctcaaaacccgttctcctgtcacttttttgtctgacttgcgcagcaacctacaggtatca
aatgaacctggcaaccgctacaacatccagctcattaatgcactggtgctctacgtaggt
actcaagctattgcgcacattcacaacaaaggcagcacaccctctatgagcaccatcacc
cactcggctcatatggacatcttccagaatttggccgtagatctggacactgaaggtcgg
taccttttcttgaatgcaattgccaatcagctgcgatatcccaacagtcacacccactac
ttcagttgcaccatgctttacctgtttgcagaggccaacactgaggctatccaggagcag
atcactagggttctcttggaacgactgattgtaaataggcctcatccctggggtctcctc
attactttcattgagctgataaaaaatccagcgtttaagttctggaatcatgagtttgtt
cactgtgctccagagattgagaagttgttccagtcagttgcgcagtgctgtatggggcag
aagcaggcccagcaagtaatggaagggactggtgccagttag
DBGET
integrated database retrieval system
