Struthio camelus australis (South African ostrich): 104147742
Help
Entry
104147742 CDS
T08512
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
scam
Struthio camelus australis (South African ostrich)
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scam04147
]
104147742 (COL18A1)
00535 Proteoglycans [BR:
scam00535
]
104147742 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
scam00536
]
104147742 (COL18A1)
Exosome [BR:
scam04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104147742 (COL18A1)
Proteoglycans [BR:
scam00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
104147742 (COL18A1)
Glycosaminoglycan binding proteins [BR:
scam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104147742 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
104147742
NCBI-ProteinID:
XP_009678865
LinkDB
All DBs
Position
Unknown
AA seq
1235 aa
AA seq
DB search
MKRSSSQLLQGTGRPAGRWGLALAGVNRSWSPSAPNMNATNDVDFPSADNSDPLEFDLLT
STMRLYSSNSAGFASFFPGLTPEAGRCLPFPARLPYCTTLGTKHFRLPNYLSHGSEAEIW
AALHEWEGLLKSRCHRYLEWFLCLLLVPGCNASVPITPPPCQGFCEAVRDLCWMHLAAGH
LPLLCDSLPAEDEGYSCVFINVSAENLSTEVSLLELIGDPPPEEILKIYGPDNNPGYVFG
PNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAITDSSQSIIYVGVKLSDLRAG
KQQIIFYYTEPGSKTSYAAATFTVPTLPNQWTRXVEEDEVVLYLDCEEHERVRFERSPDE
MELEDGSGLFVAQAGGADPDKYQGVIADLKLKGDPRAAEHQCEEEEDDTEEVSGDFGSGA
EDGRHPLGKDRGIPGLVDAIPVTSPPVAAGSVPRIGVGSPPQAERIGAEEALGPPGPPGK
DGMVGQPGPKGERGDVGDLGLPGAPGPKGSKGETGPAGTPGEMGLAGLPGPIGPRGQPGP
PGPPGPPGPGYEAGFGDMEGSGLPFTASSPGPRGPEGPQGLPGLPGIKGDAGSPGQPGLP
GLKGDPGMPGVDGRPGLEGFPGPQGPKGDRGSPGEKGERGQDGVGLPGPPGLPGPPGQVI
YMSNEDKSLAALPGPEGRPGHAGFPGPVGPKGDQGSPGFPGSPGLKGEKGEPGVIISPDG
TIVAANVKGEKGEPGPRGPMGPSGPHGRSGPKGEIGFPGRPGRPGMNGLKGEKGDPADIS
GMPGLRGPPGPPGPPGPPGPPGSAVYDNDAFGDASHPALPAFPGFHQFPGQKGEKGDVGA
PGPPGQFPYDLSRFSASLRGEKGDAGLKGEKGEPGGTALYGPSVPGLPGPPGPQGYPGLP
GPKGDSIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISIPGPPGPPG
PPGPPGTSGTSPGLRALPTYQAMLSTAHELPEGWLVFLADRQELYVRVRNGFRRVLLEEH
TLISSSALDNEVYDKPPSVHYSHGGTIPSGSQHPFQPRGPLHPLRNHSPPPTARPWRGDD
IVANQHRLPEQPLLHHGTQHQQELLNSYYINRRPDPAPVATHVHQDFQPALHLVALNAPL
SGSMRGIRGADFQCFQQAREVGLLGTFRAFLSSRLQDLYSIVRRADRSTVPIVNLRDEVL
FSNWESLFAGSEAPFRAGARILSFDGRDVLRDSAW
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtagcagcagccaactgttgcaaggcactggacgacctgctggccgctggggg
ctagcgctagctggtgtaaacaggagctggagcccttctgctcctaacatgaatgcaact
aatgatgtggactttccttctgccgataactctgatcctctcgagtttgatttactaacc
tccactatgcgactttatagtagtaacagcgcagggtttgcttccttctttcctggactg
acgccagaggctggtcgttgcctgcccttcccagcccgcctgccctactgtaccaccttg
ggcaccaaacatttccgattgccgaattatctcagccacggcagcgaggcagaaatttgg
gctgctttgcatgagtgggaggggctgcttaaatcgcggtgtcaccgctacttggagtgg
tttctctgcttgctcctggtccctgggtgtaacgcttctgtccccataacccccccgcca
tgccagggcttctgtgaggccgtgagagacctgtgctggatgcacttggccgctgggcac
ctgcctctcctgtgtgactctctccctgcggaggacgaagggtattcttgtgtctttatt
aatgtttctgcagagaatttgagcactgaagttagcctcctggagctgatcggagacccc
ccgccagaggagatcctcaaaatttatggccccgacaacaacccaggctatgtctttgga
cccaatgccaacacaggccaggtggcccggtaccacctgcccagccccttttaccgggac
ttttctctcctgttccacatccagcccaccaccccccgggccggcgtgctctttgccatc
acagactcctcgcagagcatcatctatgtgggtgtcaagctctcggacctgcgggcgggt
aagcagcagatcatcttctactacacagaaccgggctccaagacctcctatgcggcggcc
accttcaccgtgcccaccctgccgaaccagtggacacgcnctgtggaagaggacgaagtc
gtcctctacctggactgcgaggagcacgagcgggtccgcttcgagcgctccccagatgag
atggagctggaagatggttctgggctctttgttgctcaggctggaggagctgacccagat
aaataccagggggtgatcgctgacctgaagctgaaaggggatccccgggcagccgagcac
cagtgtgaggaagaggaggatgacactgaagaggtatctggcgattttggcagtggagca
gaggatggacgccatcccttgggaaaagacaggggcatcccggggctggtggatgccatc
cctgtcacttctccccccgtggctgcgggcagcgtgccgaggatcggcgtgggctccccg
ccgcaggcagagcggatcggggcagaggaggcgctgggtcctccgggtcctccggggaaa
gacggcatggttgggcagccagggcccaaaggagagcggggtgatgtgggggacctcggc
ctccctggagcacctggacccaagggcagcaaaggagaaacagggccagcaggaaccccg
ggagaaatggggttagctggccttcctggacccatcggaccccgagggcagccaggtccc
ccaggcccacctggaccaccggggccggggtatgaagctggatttggcgacatggagggc
tcagggctgccgttcaccgccagctcccctggaccacgcgggcccgaaggaccacagggg
ctgccgggactgccaggaatcaagggagatgctggcagccctgggcagcctggcttgcca
ggactgaagggggaccctggcatgcctggtgtggacggccgccctggactggagggcttc
cctggaccacagggacccaaaggtgacagaggcagccccggtgagaagggcgaacgaggc
caagatggtgttgggttgcccggcccccctggtttacctggcccaccaggacaggtcatc
tacatgtcgaatgaagacaagtctttggcagctttgccaggcccggagggcagaccgggc
catgctggcttcccaggccctgtaggaccgaaaggagaccagggatcgcctggcttcccg
ggctcaccagggctgaagggtgagaagggagagcctggtgtcatcattagcccagacggg
accattgtagctgctaatgtgaaaggagaaaagggggagccagggccacggggacccatg
ggcccatctggcccccacggacgctctggaccgaagggagaaatcggctttccgggcaga
cctgggcgtccaggcatgaacgggctaaagggtgagaagggcgaccccgcggacatcagt
ggcatgccaggcttgcggggtcccccaggtcccccgggccctccagggccccccgggcca
cctggcagtgcagtctacgacaacgacgccttcggtgacgccagccatcctgcactgccg
gccttccctggtttccaccagtttccaggacaaaagggagaaaaaggagatgttggtgct
ccgggccccccgggccagttcccgtacgacctgagccgattcagtgccagcttgcggggt
gaaaaaggggatgcaggcctcaagggcgagaaaggtgaaccaggcgggacagcgctgtat
ggccccagtgtccccgggctgccaggcccaccgggtccccagggctaccctggcttgccg
ggtcccaagggggacagtattgttgggccaccggggcctccaggacctcagggacccccc
ggcattggatacgaggggcggcagggcccccctggcccgcccggtccccctggtcctccc
tccttcccaggcccacacagacaaactatcagcatccctggccctcctggcccaccagga
ccccctggaccaccaggtaccagcgggacatctcctgggctgcgcgccctgccaacgtac
caggccatgctgagcaccgctcacgagctgcctgagggctggctcgtcttccttgctgac
cggcaggagctctacgtccgcgtgcgcaacggcttccgcagggtgctgcttgaggagcac
accctgatctccagctctgctctggataacgaggtgtatgacaagccacccagcgtccac
tactcccacggcggcaccatcccttcggggtcccagcaccccttccagccccgtgggccc
ctgcaccctctccgcaaccacagccccccgcccaccgcccggccctggcgaggggacgac
atcgtggccaaccagcaccgtcttcctgagcagcctctactccatcacgggacccagcat
cagcaagagctcctgaacagttactacatcaaccgccggccggatccagcccctgtagcc
acccacgtgcaccaggacttccagccggccctccacctcgtggctctgaatgccccgctg
agcggcagtatgcgcggcatccggggagctgacttccagtgcttccagcaagcccgtgag
gttggcctcctgggcactttccgggccttcctctcctcccgcctgcaggacctgtacagc
atcgtgcgcagggccgaccgcagcacagtgcccatcgttaacctccgggacgaagtcctc
ttcagtaactgggagtccctctttgcgggcagcgaggccccgtttcgggccggcgcacgc
atcctctccttcgacggccgcgacgtcctgcgggactcggcgtggtga
DBGET
integrated database retrieval system
