Struthio camelus australis (South African ostrich): 104147834
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Entry
104147834 CDS
T08512
Symbol
PCF11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104147834 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scam03021
]
104147834 (PCF11)
03019 Messenger RNA biogenesis [BR:
scam03019
]
104147834 (PCF11)
Transcription machinery [BR:
scam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104147834 (PCF11)
Messenger RNA biogenesis [BR:
scam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104147834 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
Motif
Other DBs
NCBI-GeneID:
104147834
NCBI-ProteinID:
XP_009679009
Ensembl:
ENSSCUG00000013537
LinkDB
All DBs
Position
Unknown
AA seq
1626 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVTSGASTPPAVPEI
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPS
KQHVSPTPHMAVKPPHQTAVQPEKNKPSPSPPLHDIKIVNRDPRLNRMAQHSSHAKDQSH
RKEFPPNTANQSDTKANKTAQAEKQNSSKQEKLKASEKTPKKELDQSEAKSKSPSPLKNK
LPSAKDTKTQECESAKVSEISKRDPRLKKHLQEKPEGKEDEVKEKKKNADKKEKEEHKTC
EHRPVGSRNXFVQKQDAATEESEKQGGKQGRSSNRKRSRSRSPKSRSPSTHSPKRRDRRS
PKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEECAQTARDERNSNKRNLKQEVRDPRRVKK
AQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQSEEHQALGKSP
HQRHRENWAASKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLASGEIT
QDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAKLKRT
QVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKSKRGVQFDRKEPFGERSRRHSPVS
GSSRPFPDNLSPLEGRRRLEEQNATKGARGSKSFDPYDSWGESDEFREALRQQGKSTPEF
QKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDPEKAPFSESPGSRFGG
IEVKQRISALMEERPLFDGSPRPPAARVGVDGPGSPFVDGPSPGSNSRIDGPPGQAAMRF
EGPLVGGGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQVGGGGPLRFEGPLG
QLGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQLSGGLRFEGPHGQPLGPRGQPGGG
LRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGPSGAGLRFEGPH
GPSGGGLRLEGPGVGPRLIDGPAHQGGGGLRFEGPLGRTGPRFDGCHSAGFDGQPGQLSL
LQRFEGIHGQPGPRFERAPGQQAQPRFDTAIPQRFDGPHQQPSRFDLPLGLQGARFENVA
NHPASRLELPPYGQSGPFGEHPSQGYNGPSHGMQFQRPELFDGSPGPNFNGPAGPGAQNF
ALRASGHYFDEKSLQGPQYGNFNNMSVGNNQVSLMSAQPGPYSQGQQYLPNPGSFVQNPA
GGLPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNETSAQPAAEEEEDDQDQ
SEDQDVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEAAKEKEF
QSVPAGPAGADESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAEESTPASTDIKTEP
DKVESV
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgtgggaagagagtatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactctatgcc
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgccagaggaatct
actgcacctacctctgctgtcacttcaggtgcctcaactcctccagctgttcctgaaata
caaaagaatttgacacaggagcaactgataaggcaacagttgcttgcaaagcaaaaacag
ttgttagaacttcagcagaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtttctcttagtgttcaacaagggtcatctactatagcttcagttccagcaccttcc
aaacaacatgtgtctccgacacctcatatggcagttaaacctcctcatcagactgctgtg
caacctgaaaaaaacaaaccatcccccagtcctccgctccatgatatcaaaatagtaaac
agggatcctcgacttaataggatggctcagcattcttctcatgctaaagatcagtctcac
aggaaagaatttccaccaaacacagccaatcaatctgataccaaggcaaataaaacagct
caggctgaaaagcagaattcatcaaagcaagaaaaattgaaagcaagtgagaaaacaccg
aagaaagaacttgatcagtcagaagcaaaatctaaatcgccatcacccttgaaaaataag
ctacccagtgctaaagatactaaaacccaggaatgtgaaagcgcaaaagtttctgaaatc
agtaaacgggatccaagattgaaaaaacatcttcaagaaaagccagagggcaaagaggat
gaagtgaaagagaagaagaaaaatgcagataaaaaagaaaaagaggaacataagacatgt
gaacacagaccggtaggcagcaggaatntttttgttcagaaacaagacgcagctacagag
gagtcagaaaaacagggtggaaaacaagggagatcgagtaatagaaaacgctcacgatca
cgctctccgaaatcacggtcgccgtctacacattctccaaaaagaagagacaggagatca
cccaaaagaagacttaggagtttatctcccacttcttcaactcctaaaattggaaagatc
cgtcagataggtcctaagcagtctcatgttgaagaatgtgcgcaaacagcaagagatgaa
agaaattctaataaacgaaacctgaagcaagaggtgcgagatccaaggagagtgaaaaaa
gcccaagaagataggccccaagaaacagcaagccagcattctacaaaagcctctcctgat
ccaaaggagaatgcagaaaactggcaaggatccaaatcaggcaagaggtggaaatctggt
tgggaagaaaataaaaactcacagcagagtgaagaacaccaagcacttggtaaatcacct
caccaaagacaccgggaaaattgggctgctagtaaaggaattttgtcaccccgagcacca
aagcagcagcaccggttaagtgtggatgccaatttacagattcccaaagaattgacatct
gcaagcaagagagaactgcttaaaaaggcaaatgaacgcttagcatctggtgaaataaca
caagatgagttcctcgttgtagctcatcagatccgacagctgttccagtatcaggaagga
aagcacagatgcaatgtgtgggatagtcctacagaagaaaaatgtggtttgaaaaagaaa
cctcttctatctgatgcagaattaacgtattacgaacacaaagctaaattgaaaagaaca
caagtacagcattcattgtcgagacttgatctgttagatcctgatgatattttggattat
catatacctgatgctttactttctggaatagaatgtgagcaagccaaaagtaagcgtgga
gtacagtttgacagaaaagaaccgtttggagaaagatccaggcgacattctcctgtaagt
ggcagtagtagaccttttcctgataatctttcaccacttgagggtcgacggagacttgag
gaacaaaatgctactaaaggagcaagaggttctaaaagctttgatccttatgacagctgg
ggagaatcagatgaatttagagaagctctcagacaacaggggaagagtacaccagagttc
cagaaaatagatggtgatgcaatctgcagatttgataatcgtgaagaaagacagcttctt
gggcaagctggtgttcgagaggaaccaaggtccccgttcagtgaacgtttcaagagagcg
cggtatgaagatccagagaaagcaccgttttcagaaagtccaggatcaagatttggaggc
attgaagtaaagcagagaataagtgcactgatggaggaaaggcctctatttgatggctcg
cctagaccgcctgctgcaagggttggggtagatggaccaggaagtccttttgttgatggt
ccttcgcctggttcaaattctagaattgatgggccacctggacaggctgctatgagattt
gaggggcctctagtagggggaggtgcctctcagtttgatggaccactggcaggagcaggg
ggagctggagccctaagatttgatgggccaccagggcagctggcaggtgccctcaggttt
gaaggacccccaggacaggttggtggaggaggtccgttgaggtttgagggaccccttggg
cagctaggtggtcctttgcggtttgaggggccagcagggcagcctgtaggtggtcctaga
tttgaaggacctggagttggtctcaggtttgaggggccccgtggtcaactttcaggtggt
ctcaggtttgagggaccccatggtcaacctctggggcctcgaggtcaaccagggggtggt
ctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaaccggggggtggt
ctcaggtttgaggggccacacttacagccgttggggccccatggtcagcctggaggtggc
ctcagatttgaagggccacatggaccatcaggtgctggacttagatttgaggggccacat
ggaccatccggtggtggactcagattggaagggccaggggtgggtcctaggttaattgat
gggccagcacaccaaggtggtggtggtcttagatttgaaggtcctctgggtcgaactggt
ccaagatttgatggctgtcattcagctggatttgatggtcagcctggacagttatctctt
ctgcaaagatttgagggaattcatggacagcctggcccaagatttgaaagggcacctggc
caacaggcacaaccacgatttgatacagccatacctcaaagatttgatggtcctcaccag
caaccctcaaggtttgacttgccccttggccttcaaggtgcacgttttgaaaatgtagct
aaccatcctgcctcaagactagaattgccaccgtatggacaaagtggtccatttggtgaa
catcccagccagggctacaatggaccatctcatgggatgcagttccagagacctgaacta
tttgatggttctccaggaccaaatttcaatgggccagctggcccaggagcacagaatttc
gctttgagagcatctggacattattttgatgagaagagtcttcagggtcctcaatatgga
aacttcaataatatgtcagtgggaaataatcaggtgtctctcatgtccgctcaaccagga
ccttacagccaaggtcagcagtatttaccaaatcctggaagctttgttcagaacccagca
ggaggccttccacattcataccctgataaccaccttggccagcttgatgtcaatgagttg
tttgctaaactgctgtcaacaggaatccttaaactgtcaaaaactgattccacgtcagca
caagtgaatgaaacatcagcccagccggctgctgaagaggaggaggatgatcaagaccag
agcgaagatcaagatgtcccagacctcactaactttacagttgaagaactcagacagcgt
tacgatagtgttataaatcgactgtacactggaattcagtgttactcgtgtggaatgaga
tttactacttcacagacagatgtttatgcagatcatttagattggcattatcgccaaaac
cgtacagaaaaggatgttagcagaaaagttacgcacagaaggtggtactacagtttaacg
gactggattgaatttgaagaaatagctgatctagaggagcgtgcaaaaagccagtttttt
gaaaaagctcacgaagaggttgtgttgaagacacaagaagctgcaaaagagaaagagttt
cagagtgttcctgctggaccagctggagcagatgagagctgtgaaatttgccaagagcaa
tttgaacagtattgggatgaggaagaggaagaatggcatctgaagaatgctattagagta
gatgaaaagatttaccatccatcatgttacgaagattaccaaaacacgtcgtcatttgat
tgcacgccatctcccagcaagactcctgtggaaaatccactaaatattatgttgaacatt
gttaaacaagaaacacaagaatcctgtgactcccctaaagtcaaagaagaacctgatgac
acccctactgcctgtgcagaagagagcacacctgcatctacagatattaaaacagaacct
gataaggttgagtctgtttaa
DBGET
integrated database retrieval system
