Struthio camelus australis (South African ostrich): 104149408
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Entry
104149408 CDS
T08512
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03013
Nucleocytoplasmic transport
scam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104149408 (UPF2)
03015 mRNA surveillance pathway
104149408 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scam03019
]
104149408 (UPF2)
Messenger RNA biogenesis [BR:
scam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104149408 (UPF2)
mRNA cycle factors
P-body specific factors
104149408 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
104149408
NCBI-ProteinID:
XP_009681305
Ensembl:
ENSSCUG00000013398
LinkDB
All DBs
Position
Unknown
AA seq
1271 aa
AA seq
DB search
MPAERKKPASMEEKESSLNNKEKEFSERRPVSTREKPKDDVKVGMKRETLKVPEDKKKKL
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQSKDSGKDESRDSKDAKDNKEAPGSEDLELELENLDINDDPLELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRQVQDLEREFLIKLGLVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgaaaaaagccagccagcatggaagaaaaagaatcttcattaaataat
aaagagaaagagtttagtgaaaggcgaccagtgagcactagagaaaagccaaaagatgat
gtcaaggttggaatgaagagagagactttaaaggttcctgaagataaaaagaaaaaactg
gaagaggataaaaggaaaaaagaagacaaggagcggaagaaaaaagaagaggataaagta
aaggctgaagaagagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaggaa
gagaaaaagaagcaagaggaggaagttaaacgtcaacaagaggaagcagctgctcaactc
aaagaaaaagaggaagcccatcagctccatcaggaggcttgggaacgccatcaagcaagg
aaagaacttcgtagcaaaaaccagaacgcgccagacaatcgccctgaggaaaacttcttt
agcaggctagactccagtctgaagaagaacacagcttttgttaagaagctaaaaaccatc
acagagcaacagagggactccttgtcccatgattttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaagctaaactgaaaatatccgatgtgaattgt
gctgtgcacttgtgttccctctttcaccagcgctatgctgattttgctccttcgttactt
caggcttggaaaaaacattttgaagcaaggaaagaggagaagactcccaacattaccaag
ctaagaactgatttgcgtttcattgcagaattgacaatagttgggatcttcacggacaag
gaaggtctgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgatattgctggt
ttggtaccaaggaaagtaaaaactgctgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcattcttcactccaaaggagagctgagcgaagatcggcacaagcaatatgaggaa
tttgcaatgtcctatcagaagctgttggcaaattctcagtctctggctgatcttttggat
gaaaacatgcctgaccttccccaagacaaaccaacacccgaggagcatgggcccggtatt
gacattttcacaccgggcaagcctggagaatatgacctggaggggggtatctgggaagac
gaagatgctagaaatttttatgagaatctcattgacttaaaggcttttgtgccagcaatt
ttgtttaaagacaatgaaaaatgttcccagagcaaggattccggcaaggatgagtcaaga
gattcaaaagatgccaaagataataaggaagcacctgggagtgaagatttggagttggag
ctggagaacttggatattaatgatgatcccctggaattagactgtggagatgaggcagaa
gatcttacaaaaaagcttctcgatgaacaagaacaagaggatgaagaagccagtactgga
tctcatttaaaacttatagtagatgcttttcttcagcagcttccaaattgcgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacaaaagccaataga
agaaaattagtacgagcacttttcatagttcctagacaaaggttggatttgctaccgttt
tatgcaaggctggttgccacattgcatccctgtatgtctgatgtagcagaggatctttgt
tccatgctgaaaggggatttcagatttcatgtgaggaaaaaggaccagatcaatattgaa
acgaagaataaaactgtgaggtttattggtgagcttacaaagtttaagatgttctccaaa
aatgatactctccactgtttaaagatgcttctgtcagacttttctcatcaccacattgaa
atggcgtgtactctattggaaacctgtggaagattcctgtttagatcaccagaatctcac
ttaagaaccagtgttcttttggagcaaatgatgagaaaaaaacaagcaatgcatcttgat
gcacgctatgttacaatggtggaaaatgcctactactactgtaatccccctccagctgaa
aaaactgtgaagaaaaaacgacctcctttacaggagtacattcgtaagcttctttacaag
gatctctccaaggtcaccacagaaaaggtcctgagacagatgcgcaagctgccctggcag
gatgcagaagtaaaagactatgttatatgctgtatgattaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagctggcttggtcctttaccaggaagatgtt
ggaattcatgttgtggatggagtactagaggatattcgactaggaatggaggttaaccag
ccaaagtttaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattac
cgaatggtagagtcagctgtaatatttcgaactctgtattcattcacatcatttggtgtg
aaccctgatggtagtcctagtccattggatcctccagagcatcttttcaggattagacta
gtctgtaccatccttgatacctgtgggcaatattttgacagaggatccagcaaacgaaaa
cttgattgcttccttgtatactttcagcggtatgtttggtggaaaaaaagtttggacgtt
tggacaaaagaccatccatttcctatagacattgactatatgatcagtgataccttggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctatcagacaggtgcaa
gatttggaacgagaattcttaataaaattaggacttgtgaatgacaaagactccaaagat
tccattacagaaggagagaatctagaagaggatgaagaggaagaagaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtaaacgaaccagaggaagaggagggttct
gacaatgaagaagaagaaggtgaagaagaggaggaagaaaacactgattatcttacagac
tccaataaggaaaatgaaacagatgaagagaatacagaagtaatgattaaaggaggagga
ctcaagcatgtcccttgtgcagaagatgaagacttcattcaggcgttagataaaatgatg
ctggaaaaccttcagcaacggagtggagaatctgttaaagtacatcaattggatgtcgct
attcctctacatctcaaaagtcagctaaagaagggtcccccgcttggaggtggggaagga
gaatcggagtctggcgacacaatgccatttgtcatgttgacacgaaaaggcaacaaacag
cagtttaagatcctaaatgtaccaatgtcttcccaacttgctgcaaaccattggaaccaa
caacaagctgaacaggaggagagaatgagaatgaaaaagctcactttggatatcaatgaa
cggcaagaacaagaggactaccaagagatgttgcagtctctggcacagcgtccagctcca
gcgaatactaatcgtgaacggcggcctcgttaccagcatccgaagggagcacctaatgca
gacctaatctttaaaactggtgggaggagacgttga
DBGET
integrated database retrieval system
