Struthio camelus australis (South African ostrich): 104149701
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Entry
104149701 CDS
T08512
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104149701 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scam03019
]
104149701 (PARN)
Enzymes [BR:
scam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104149701 (PARN)
Messenger RNA biogenesis [BR:
scam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104149701 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
104149701
NCBI-ProteinID:
XP_009681774
Ensembl:
ENSSCUG00000016044
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MDFLLFQFGLCTFKYDHAEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVTIPEDQKKFI
EKVVEQIEDFLKSEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVI
SKVNEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIISNTSLAELEKRLKEVPFSPPKVE
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFNK
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLKT
QCTPYVSQSRYYCVNSFTGTSTLGKRSMSPIQEETCSDDMEEGDVQDLECDQTDSCTESF
PDGKKRAKKFKKIKKEQVPAGSLTSSSTEIFEVPETW
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggattttttgctctttcagtttggcctttgcacttttaaatatgaccatgcagaagaa
aagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagttca
ccagacgtcaagtttgtctgtcagagttcaagtatagactttttagcaaaccaaggattt
gattttaataaagtttttcgcaatggaattccatatttaaatcaagaagaagaaagacag
ctaagggagcagtatgatgaaaaacgttctcaggccaatggtgcaggatctctgtcatat
atttctcctaatgccacaaaatgtcctgtaacaattcctgaggatcagaaaaaattcatt
gaaaaagtagtggaacaaatagaagacttcttaaagagtgaagaaaatgaaagtttggaa
ctggaaccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaaatat
ccaaaaggtatccatgttgaaactctggaatcagataagaaggagagatatattgtcatt
agtaaggtaaacgaagaagaacgaaaaagaagagaacagcaaaaacaagcaaaagaacag
gaagaactgaatgatgcagtaggattttccagagtcgttcatgccattgctaattctggc
aaacttgttattggacacaatatgctgctggatgtcatgcatactatacaccagttctat
tgtcccctacctgatgacctaagtgagttcaaggaagtaacatcgtgcgtatttcccagg
ctattggatactaaactgatggcaagtactcaaccttttaaggagatcattagtaacaca
tcccttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagttgaa
agcgcagaagggtttccaagttatgatacagcttctgaacaacttcatgaagcaggctat
gatgcttacattactggactgtgcttcatctccatggctaattttctaggttcatttctc
agtcctccgaaaaatcacgtgtctgctagatcaaaactcattgaacctttttttaacaag
ctatttcttatgagggtaatggacataccatatctcaatttggaaggaccagacttgcag
ccaaaacgagatcatgttcttcatgttacgtttcccaaagagtggaagactagtgatctt
tatcagctttttagtgcctttggtaacattcaagtttcgtggattgatgatacatcagcg
tttgtctcactaagtcaaccagaacaagttcagatagctgtaaacaccagcaggtatgct
gaaagttataggatccagacatatgcagaatatgttgagaaaaaacatgaagaaaaacaa
gcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcgattaaaaact
caatgcacgccttatgtttcccagagtcgatactactgtgttaacagttttacaggtacc
agtacattgggaaagagaagcatgagtcctattcaggaagaaacctgttctgatgatatg
gaagagggagatgtccaagatctagaatgtgatcaaacagactcctgcacagagtctttt
ccagatggtaagaagagagccaagaagttcaaaaagatcaagaaagaacaagttccagca
ggaagcctcacaagtagctccactgaaatttttgaagtccctgaaacatggtag
DBGET
integrated database retrieval system
