Struthio camelus australis (South African ostrich): 104150228
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Entry
104150228 CDS
T08512
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scam
Struthio camelus australis (South African ostrich)
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scam03016
]
104150228 (RTCB)
Enzymes [BR:
scam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104150228 (RTCB)
Transfer RNA biogenesis [BR:
scam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104150228 (RTCB)
Prokaryotic type
tRNA splicing ligases
104150228 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104150228
NCBI-ProteinID:
XP_009682655
Ensembl:
ENSSCUG00000016980
LinkDB
All DBs
Position
Unknown
AA seq
440 aa
AA seq
DB search
MKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVR
LLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYA
WAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARK
MGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASAEGQD
YLKGMAAAGNYAWVKRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDG
KERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGT
TCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTC
HAAGISKKAIKLRPIAVIKG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagattgggaatgtggctgccttacctggcattgttcatagatcaataggcctt
ccagatgtccattctggctatgggtttgccattggcaacatggcggccttcgatatgaat
gatcctgaagcagtggtgtcaccaggtggtgtcgggtttgacatcaactgtggtgtccgc
ttactacgtacaaatctggacgaaagtgatgtacagcctgtgaaggagcagctcgcccag
gctatgtttgaccacattcctgttggtgtgggctccaagggtgtcatccccatgaatgcc
aaggatttggaagaggcgctagaaatgggtgtggactggtctctccgggaaggctatgcg
tgggcagaggacaaagagcactgtgaagaatatggaaggatgctgcaggctgatcccaac
aaggtttcctcaagagcaaagaagaggggcctccctcagctggggaccctgggagcagga
aaccattatgccgagatccaggttgtggatgacatttacaacgaatatgctgccaggaaa
atgggcatcgaccacaaggggcaggtgtgcgtgatgattcacagtggcagcagaggtttg
ggccaccaagttgccacagatgcattggtggctatggaaaaagctatgaaacgggacaaa
atcatagtgaatgatcgccagctggcctgtgccaggattgcctctgcagagggtcaggat
tacctgaagggaatggcagccgctgggaactatgcctgggtcaaacgctcttctatgact
ttcttaacaagacaggcctttgctaaagtcttcaacacaaccccagatgaccttgatatg
catgttatctatgacgtatctcacaacattgccaaagtggagcagcatgtagtggatgga
aaagagcggactctgctggtgcacaggaagggatcaaccagggccttccctcctcaccat
ccccttattgctgttgattatcaactgactggacagcctgttctgattggcgggactatg
ggcacctgtagctacgttcttactggcacggagcaaggcatgactgagaccttcgggact
acttgtcatggagctggtcgtgcactgtctcgagccaaatctcgacgtaacttggacttc
caggatgtattggacaaactggctgacatgggcattgccatccgtgttgcttctcccaaa
ctggttatggaagaagcaccagagtcctataagaatgtgacagatgtggttaacacctgc
catgcagctggcatcagcaagaaagccattaaactgagacctattgctgttattaaaggc
tag
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