Struthio camelus australis (South African ostrich): 104150485
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Entry
104150485 CDS
T08512
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-15-like
KO
K16494
protocadherin beta
Organism
scam
Struthio camelus australis (South African ostrich)
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scam04515
]
104150485
Cell adhesion molecules [BR:
scam04515
]
Cadherins
Protocadherins
104150485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
RibLong
SGBP_BT4661-like
Motif
Other DBs
NCBI-GeneID:
104150485
NCBI-ProteinID:
XP_009683057
LinkDB
All DBs
Position
Unknown
AA seq
1357 aa
AA seq
DB search
MGLRKSEEPLSGRTVPVILLLCVSGVSAETIRYSVPEEAERDFFVANIAKDLGLTAEELS
ARRARLVPEGEQQYLQLNQHTGDLFVQEKMDREALCGQSEPCLVRFEVLLESPLQSFRAE
VSVSDINDHAPMFLNREMILKIPESAMPGARFLLESAQDPDVGNNSLQHYHISSNDYFRI
STLRRSDGRRYAGLVLXGREERAEVTFSFTAVDGGSPPRSGTSLIRVQVLDINDNIPVFT
RSLYKVRVPENSAEDTLVVGVSASDLDAGKNGEIAYSIVPNSEENHQTFKINPETGQIRL
KNPVDYEETKTYEIDVQATDGGGLSAHCKVLVEVVDVNDNAPEVTITSLTSPLSEAAPPQ
TVVALYSVRDRDSGDNGRTSCELLGDLPFSIVALAGEFASSQRRRGPRLSAERKQSTGEI
GGEQQRPKRPRWGRCRELGCRRVPACAGRAGKEGTIFTHASYTMVLRENEPAGTSLGLVS
AMDADVGKNARVSYALVPPEPGAATVASFVRRRWRKAPTADSGQNAWLSYELAKATEPGL
FRVGLHSGEVRTARAVAERDAARQGLVVLVRDSGQPPRSSTVTLSLALLEGFSDAFLQLS
HAPAGKPEGDGDGDGDEENLLAPYLVASLCSVSSLFLFAAVAFSGAKLCKGRLRGRRSPA
SAHGYAAGDVCSSFADVAGAGTLSAAYGYEVCLSTGSGKSALQRVPLPGGPGRRSARRRV
SAGPDMASARQVLCLCVVLSVPHVRSEPLRYSVAEERESGSLVANVAKDVGLDLAQLWAR
EARLVSEDGRQHFRLDRRTGRLAVRERIDREEICGQSITCTLSFELLLGNPLQFFRIEVA
VEDINDHSPVFPEEQVTLKILETSEPGSRFPLEGARDLDVGSNSLQAYSIAPENEYFSVS
FRSQSEGDSSVELVLAKPLDREEQAEIGFSLIATDGGSPPRSGTAQIRIVVLDVNDNAPV
FTQERYRGQVLEDAPEDSVVLRVVATDADVGVNGEIRYSFSQAVGHRRPAFKIDAVTGDI
RVTRPLDFEAAEKHELSVRATDGGGLSALCKVVVEVVDVNDNAPELVVSSFRSPLAESAS
PGTVVGLFVVKDRDAGDNGKVVCSLEDSVSPFSLRPAYKNYYELVTASTLDREQTAQYIL
AVTAADAGSPALTTTQTFTVDVSDVNDNAPVFNQTSYTMYVRENNDPAALVGAVRAADED
VGPNSKVTYSLAPAQPAERAPRSYVSVNSENGNVFVLRPLDYEQVRQLEVVVSAADSGSP
PLSANVTVRILVVDENDNAPVVLHPAQDSSPPSSELVPTSAEAGYLVTKVVAVDADSGQN
SWLSYHLLKATDPGLFAVGAQTGEVRLRRPVTERDTV
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggggctgagaaaaagtgaggaaccactctcagggcgaacggtgcctgtgatcctgctc
ctctgtgtgtcgggggtgagtgcagaaaccatccggtactctgtgcctgaagaggcggag
agagacttctttgtggcgaatatagcaaaggatttgggactcacggctgaggaattatcg
gctcgacgagcccggctcgtacctgaaggagaacagcaatatttacaactgaaccagcac
actggagatttgtttgtgcaagaaaagatggatcgagaggcgctgtgcgggcagagcgag
ccttgcctggtgaggttcgaggtgttgctagaaagcccactgcagtccttccgagccgag
gtaagcgtcagcgatataaacgatcatgctcccatgttcttaaatagggagatgatttta
aagatcccggaaagtgcaatgccgggagctcgatttttgctggaaagtgctcaggatcca
gatgtggggaataacagtctccagcactaccacatcagttcgaacgactatttccgtatc
tccaccctgcggcggagtgacggcaggcggtacgccgggctggtgctgncggggagggag
gagcgggcagaagtcaccttcagcttcacggctgtggatggcgggtctccaccgcgttct
ggtacatccttgatccgcgtgcaagttttggatataaacgacaacatcccggtattcacc
aggagtctatataaagtccgagtgcctgaaaatagcgctgaggacaccttagtggtgggg
gtgtctgctagcgatttagacgcaggaaagaacggggaaatagcgtactccatcgttcca
aattcagaggagaatcaccagacttttaaaataaatccagagacagggcagattcgactc
aaaaacccagtggactacgaagaaacaaagacctacgagatagatgtccaggccacggat
ggaggcggcctgtccgcgcactgcaaagttctggtggaggtcgttgacgtgaacgacaat
gcccccgaggtgaccatcacctccctcaccagccccctctcggaagcagccccaccgcag
accgtggtggccctgtacagcgtgcgggaccgggactcgggggacaacggcaggacgagc
tgcgagctgctgggcgacctacctttcagcatcgtggcgctggcaggagagtttgcgagc
agccagcgcaggcggggtccgcggctctctgcggagagaaagcagagcacgggggagatt
ggcggagagcagcagcggccgaagcggccgcgctggggtcgctgccgcgagctggggtgc
cggcgggtgccggcgtgtgccggacgggcagggaaggaagggaccatcttcacccacgcc
tcctacacaatggtgctgcgcgagaacgagcccgcggggacgagcctgggcctcgtgagc
gcgatggacgcggatgtggggaagaacgcccgcgtgagctacgcactggtgccgcccgag
cctggcgccgcaactgtggcctccttcgtgcgccggcgctggaggaaagcgccgacagcg
gactcggggcagaacgcgtggctgtcgtacgagctggccaaggcgacggagccggggctc
ttccgcgtggggctgcacagcggcgaggtgcgcacggcgcgggccgtggcggagcgggac
gcggccaggcagggactcgtcgtgctcgtgagggacagcggccagccgccgcgctcctcc
accgtcaccctcagcctcgccctgctggagggcttttccgacgccttcctgcagctttcc
cacgctcctgcgggcaaaccggagggcgacggcgacggcgacggcgacgaggagaacctg
ctagccccctacctcgtcgcttccttgtgctccgtctcctctctcttcctcttcgccgcc
gtcgccttttcgggggcgaagctctgcaagggtcgactacgaggaaggcgttcacctgcc
tctgcgcacggttacgccgctggcgatgtctgcagtagttttgcggacgtggccggcgcg
ggcactctgtcggcggcttacggctatgaagtgtgcttgagcaccggctcggggaagagc
gcgttgcagcgcgttcctctccccggaggaccgggcaggcgatccgcgagacgcagggtg
tctgccgggcccgacatggcgtctgcaaggcaagtgctttgtctctgtgttgttctctcc
gtgccgcatgttcgctccgagccgcttcgctactcggtcgccgaggagagggagagcggc
tccctggtcgctaatgtcgcgaaggacgtggggctggacctggcgcagctctgggctcgc
gaggcccggcttgtttcggaggacggccggcagcattttcggttagaccgcaggaccggc
cgcctggccgtcagggagaggatagatcgggaagagatctgcggccagtccatcacgtgc
acgctctcctttgagttactgctgggaaaccccctgcagttctttcggatcgaagtggcc
gtagaggatatcaatgaccattcgccagttttcccggaggaacaagtgactttaaagatc
ctggagacgagcgagccggggtcccgcttcccgctggagggggctcgggacctggatgtt
ggcagcaacagcctgcaggcttacagcatcgctcccgagaacgagtatttcagcgtctct
ttccggagtcagagtgaaggcgacagttccgtcgaattagtcttggccaagccgctggac
agagaggagcaagcggagattggtttcagcctcattgccacggacgggggctctccgccg
cggagcgggacggcccagatccgcatcgttgtcctggacgtaaatgacaacgcccctgtc
ttcacgcaggaacggtacagaggccaggttttggaagacgccccggaggactccgtggtt
ctgcgcgtggtcgcgactgacgcggatgtgggagttaacggggagatacggtactcgttc
agtcaggcggtggggcacaggcgcccggcgttcaagatcgacgccgtgactggtgacatt
cgtgtcacccggcctctggatttcgaagcggcggagaaacacgagctgagcgtgcgcgcc
acagacggcgggggtctctcggcgctctgcaaggtggtggtggaggtggtggatgtgaac
gacaacgcgccggagctggtggtgagttccttccgcagcccgctcgccgagagcgcgtcg
cccgggacggtggtgggcctctttgtcgttaaggaccgggacgccggggacaacgggaag
gtggtctgttccctggaagactctgtgtcccctttctccctgaggcctgcctataagaat
tactacgagctggtgacagcgagcaccctggaccgggagcagacggcgcagtacatcctc
gccgtcacggcggccgacgcggggtccccggctctcacgaccacgcagaccttcacggtg
gacgtctccgacgtcaatgacaacgcgcccgtgttcaaccagacgtcgtacaccatgtac
gtgcgcgagaacaacgacccggccgcgctcgtcggggccgtccgcgccgcggacgaggac
gtggggcccaactcgaaggtgacctattccctggcgccggcccagcccgcggagcgggcc
ccgcgctcctacgtctccgtgaactccgagaacgggaacgtgtttgtgctgcggccgctg
gactacgagcaggtgaggcagctggaggtggtggtgagcgccgccgactcgggctcgccg
cccctcagcgccaacgtcaccgtccgcatcctggtggtggacgaaaacgacaacgcgccc
gtggtcttgcaccccgcgcaggacagctcgccgccgtccagcgagctggtgcccacgtcg
gccgaggcgggctacctcgtcaccaaagtggtcgccgtcgacgccgactcggggcagaat
tcgtggctctcctaccacctgctcaaggcaacggaccccgggctgttcgccgtgggggcg
caaaccggggaggtgcggctgaggaggccggtgacggagagggacaccgtg
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