Struthio camelus australis (South African ostrich): 104150963
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Entry
104150963 CDS
T08512
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam04382
Cornified envelope formation
scam04510
Focal adhesion
scam04512
ECM-receptor interaction
scam04518
Integrin signaling
scam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104150963 (COL4A6)
04518 Integrin signaling
104150963 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104150963 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104150963 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104150963 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scam04147
]
104150963 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
scam00536
]
104150963 (COL4A6)
Exosome [BR:
scam04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104150963 (COL4A6)
Glycosaminoglycan binding proteins [BR:
scam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104150963 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104150963
NCBI-ProteinID:
XP_009683793
LinkDB
All DBs
Position
Unknown
AA seq
1680 aa
AA seq
DB search
MCKNHKGGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGIQGPIGAPGFTGPEGLTGA
KGERGAVGSPGPAGQKGDKGPMGVPGFQGINGIPGHPGQPGSRGLPGIDGCNGTIGSPGV
SGSDGFPGIPGPPGRPGPKGLKGEPFFAQSSLKGMKGENGLPGLDGISGPKGFPGPTGSV
GPIGLPGLQGPMGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPGPPPSTGILEFMGFPK
GKQGEKGEPGPQGFPGEEGLPGLPGFGGIGEKGEKGVPGLPGGRGLLGLDGSDGIPGRKG
HPGIPGYPGRDGVEGMKGELGDIGPPGPPIVIDREGVVISGTXXXXXXXXIPGPPGDEGV
SGLPGLPGAAGFPGLEKDALGPGGSPGIPGVKGEIGDPGRATIGLPGTPGRVGLPGLPGV
PGLPGSSRPSYLPDTILDGRPGAPGEPGQRGLPGALGPKGYKGEAGDCACDGGATRAGQK
GISGLPGAPGSHGVPGSKGIRGDPGTVGAPGLPGPPASAGQQGLPGPKGEKGDPSYATGR
GARGDRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPGEKGLPGLPGSKGHRG
ETGSPGIGYPGPSGIRGPPGDPGMDGFPGQPGLPGPPGITLPCIVPGAYGPPGTPGFPGL
PGPKGSKGFPGVPGQPGLHGSKGQPGSPGIIGLQEGPGFPGPRGEQGSQGLPGLDGTDGL
PGKMGATGLAGTKGAPGDVYGAESGAQGEPGRPGFQGDKGLTGDLGFPGPKGVDGRPGLQ
GIKGEQGNPGYTGIPGLRGPPGPGGPFGVKGKPGPMGSVGLVGAPGCQGLPGVKGLAGDI
GPQGPAGMKGFPGLDGAPGSPGERGFSGPPGPFGRDGRPGFSGPKGEKGSPGLLGFPGMP
GLPGVPGVNGFKGTPGTAGGKGSPGVLGLQGQKGDRGDVGLPGLPVLRPPEQALQFKGDK
GEPGLPGLGGFPGPRGDKGFPGSYGQPGLPGPNGSPSRESGPHGYPGFPGPSGRPGLPGQ
KGTAGILGFPXXXXXQGSDGITGTLGFPGPVGLPGPKGDQGESIGVPGSAGAKGERGDPG
FPGERGREGLKGEPGYPGSTGVNGLKGGPGDLGQEGPAGIPGNAGPRGIPGPPGPPGQPG
SAGFPGARGTAGPKGFPGFPGLNGLNGLPGTKGSPGTPGLSEPGLKGPAGLPGPKGEEGS
PGFGRGALGFPGPKGSSGDMGPPGPVGLPGLPGTPGVSLPSDIPGRPGDAGHPGADGSSG
LPGPPGPRGPPGPASDQGDTGSPGFTGVPGLRGIKGDLGLPGPVGLPGAFGFKGIRGEPG
LMGMPGKDGPPGDPGYPGLKGEMGHRGLPGQPGAPGITPQPEKITAPAGLPGLPGIDGVP
GFEGDPGFQGPVGKPGTKGLPGRSGLKGHDGLPGSPGIAGDPGPLGAPGPQGFEGAAGKP
GSLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVEGQEKSHNQDLGF
AGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVASTQISQYISRCSVC
EAPSQAVAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRAT
PFIECNGARGSCHYFANKYSFWLTTVEQSQQFVSAPPTETLKAGQLRTRVSRCQVCMKNL
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaagaatcacaaaggtggaaagaagtcttacagtgggccgtgtggtggccgtgat
tgcagtgctggatgcaaatgttttccagagaagggggcacggggtcgaccaggaccaatt
gggattcaaggaccgattggtgctcctggatttactggaccggaaggtttgacaggagca
aaaggtgagagaggagcagtgggctcccctggaccagctggacaaaaaggcgataagggc
ccaatgggagttcctggatttcaaggcatcaatgggatcccaggtcaccctggccagcct
ggatccagaggtctgcctggcattgatggctgcaatggtaccattggaagtcctggtgtt
tctggatcagatgggtttcctggcatacctgggccacctggtcgtccaggcccaaaagga
cttaaaggagaacctttttttgcccaaagcagccttaaaggaatgaagggagaaaatggt
cttcctgggttggatggaatttctggcccaaaaggttttccaggtccaacaggttctgta
ggccctataggtttgccaggtttgcagggtccaatgggtccccctggaccaccaggtcca
aaaggtaacatgggattaggctttcaaggagagaaaggagaaaagggtgatgtaggacta
cctggccctccaggtcccccaccatccactggaatacttgaattcatgggattcccaaaa
gggaagcaaggagaaaagggtgagccaggccctcaaggattccctggagaagaaggattg
cctggcctgccgggctttggaggtattggagaaaaaggagaaaagggtgtccctggcttg
ccaggtggcaggggactgctgggactggatggatctgatgggattccagggagaaagggt
catccaggtattccaggctaccctggacgtgatggagtggaaggcatgaagggtgaatta
ggtgacatcggtcccccaggccctcctatcgttattgacagggaaggtgtagtcatttca
ggtacnnnnnnnnnnnnnnnnnnnnnnngcattcctggccctccaggagacgaaggagtc
agtggtttaccgggccttccaggagctgcagggtttccaggcctggaaaaagatgcattg
ggccctggagggtctccaggtattccaggtgttaagggtgaaataggagatcctggaaga
gcgacgattggattaccaggcactcccggcagagttggtttaccgggtctgccaggagta
ccaggattgcctggttcatcacgcccttcatacctcccagatacaatcttggatggaagg
cctggggccccaggggagcctggacagagagggctgccaggagctttgggtccaaagggg
tacaaaggagaggcaggtgattgtgcttgtgatggaggagctacaagagctggtcaaaaa
ggcatctcaggtctaccaggtgcaccaggaagccatggtgtgcctgggagtaaaggcatc
agaggagacccaggcactgtgggggcaccaggactgccaggccctccggcttcagctggt
cagcaaggtcttccaggccctaagggagaaaaaggagatccgtcctatgcaacaggcaga
ggtgctcgtggggaccgtggtgcaacagcacccagaggaccttcaggcatcccaggaact
cctggcagagatggacttccaggcttaccaggtcctccaggccctccaggtgatggtggg
ctaggtttcccaggtgaaaaaggactgccaggattacctggctccaagggccatcgtgga
gagactggttctcctggcattggatatccaggtcctagtggaattcgtgggccgccaggt
gatccaggaatggatggtttcccaggacaaccaggtcttcctggccctccaggtatcacc
ttgccctgtatagttcctggagcgtatggtccccctgggactcccggctttccaggactg
ccaggtcccaaaggcagcaaaggctttcctggcgttccagggcagcctggattacatggg
tcaaaaggacagccagggtctccaggaattataggcttgcaagaaggaccaggcttccct
gggcctcgaggagagcagggatcccaaggacttccaggactggatgggacagatgggttg
cctgggaagatgggtgctacaggcttagctggaactaaaggagctcctggagatgtatat
ggtgccgagagtggagcccagggagagcctggcagacctggattccaaggtgataaaggg
ctgactggggatcttggatttccaggaccaaaaggggtagatgggagaccaggcctccag
ggtattaaaggcgaacagggtaatccaggatatacgggcatccctggcttgcgaggacct
cctggtccgggaggtccttttggcgttaagggaaaaccaggacccatgggatcagttggc
cttgtaggagcaccaggctgtcaaggacttcctggagtcaaaggactggctggggatata
ggtccacaaggccctgctggtatgaaaggcttcccaggtcttgatggtgctccagggtct
cctggggaaagaggattctcagggccacctgggccttttggtcgagacggacgtccaggt
ttctctgggccaaaaggtgagaagggatctcctggcctgcttggtttccctggcatgcca
ggcctgcctggtgtccctggggtgaatgggtttaaaggaactcctggcacagctggagga
aaaggaagtcctggggttctgggactccaaggtcaaaaaggtgacagaggtgatgttggt
ctacctggtctccctgttcttaggcctccagaacaggcactgcaattcaaaggagacaaa
ggggagcctggcttacctggacttggaggattccctggacctagaggtgataaaggattc
ccaggcagctacggacagcccggtctccctggtccaaatgggtcaccaagcagagagagt
ggtcctcacggttacccaggtttccctggtccctctggacgacctgggctgccaggacag
aagggtacagctggcatcctaggattcccannnnnnnnnnnnnttcagggttcagatggt
atcacaggaacacttggattcccagggcctgttggcctccctggtccaaagggtgaccag
ggagagtctattggtgttcctggcagtgctggagcaaagggagagcgaggggacccagga
ttcccaggagagagagggagagaagggctcaagggtgaaccaggatacccaggaagcact
ggagtgaatggactcaaaggtggcccaggagatcttggccaagaaggaccagcaggaatc
cctggaaatgctggaccgagaggaatccctgggccaccagggcctccagggcagccagga
tctgctggattccctggagctcgtggaacagcaggacccaaagggtttcctggatttccg
ggtttaaatggtctgaatggcttgccaggcacgaaagggtctcctggaacaccaggtctg
agtgaacctggactgaaaggccctgcaggtctcccaggtccaaagggtgaagaaggttct
ccaggcttcggcagaggagctctaggattccctggaccaaaaggatcatcaggagacatg
ggtccccctggtcctgtgggattacctggcttgccaggaacacctggagtttctcttcct
tctgatatacctgggagacctggggatgcaggccacccaggagctgatgggagttcaggt
ctcccaggtcctccaggaccacgagggccccctggcccagcttctgatcaaggtgacaca
ggcagtccaggtttcactggtgttcctggcttacgaggcattaagggcgacttgggactc
cctggcccagttgggctccctggggcgtttggattcaaaggtataaggggtgagcctggc
cttatggggatgccaggtaaagatgggcctccaggggatcctggttaccctgggctgaaa
ggtgaaatgggccatcgaggtctccctggccaaccaggggctccaggtataaccccacag
ccagaaaaaatcacagctcctgcaggcttacctggtctaccagggattgatggtgtccct
ggctttgaaggagatcctggattccaaggcccagttggaaaaccaggtacaaaaggtctt
ccaggcagatctggtttgaaaggacatgatggtttacctggatcacctggcatagctggg
gatccaggacctttgggagcgccaggaccacagggatttgaaggtgctgctggaaagccg
ggctcacttggtttaccaggaatgcctggtcggagcgtgggcgttggatacactttagtg
aagcacagccagtcagaccaaatcccaccttgtcccataggaatgaataagctctgggat
ggctacagcttattgtacgtggaagggcaggaaaagtcccacaaccaggatcttggtttt
gctggctcctgtttgcctcgcttcagcaccatgccttttatttactgcaacatcaatgaa
gtgtgctactatgccagccgaaatgacaagtcctactggctctccaccactgctcctatc
cccatgatgccagtggcgagcacacagatctcccagtacatcagtcgttgctcagtatgt
gaagcaccttcccaggctgtggcggtgcacagccaggatatcaccatcccacagtgtcct
gttggctggcgcagcctatggattggatactccttccttatgcacactgcagctggggca
gaaggtggaggtcagtctcttgtctcacctggctcttgcctggaggatttccgtgctact
ccattcattgaatgcaatggtgctagggggtcgtgtcattactttgcaaacaaatacagc
ttctggctgacgacagttgaacagtcgcagcagtttgtcagtgcgcctcccacagaaact
ctgaaagcaggacagcttcgaacaagggtcagccgttgccaagtgtgcatgaagaactta
tag
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integrated database retrieval system
