Struthio camelus australis (South African ostrich): 104150963
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Entry
104150963 CDS
T08512
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam04510
Focal adhesion
scam04512
ECM-receptor interaction
scam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104150963 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104150963 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104150963 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scam04147
]
104150963 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
scam00536
]
104150963 (COL4A6)
Exosome [BR:
scam04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104150963 (COL4A6)
Glycosaminoglycan binding proteins [BR:
scam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104150963 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104150963
NCBI-ProteinID:
XP_009683793
LinkDB
All DBs
Position
Unknown
AA seq
1680 aa
AA seq
DB search
MCKNHKGGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGIQGPIGAPGFTGPEGLTGA
KGERGAVGSPGPAGQKGDKGPMGVPGFQGINGIPGHPGQPGSRGLPGIDGCNGTIGSPGV
SGSDGFPGIPGPPGRPGPKGLKGEPFFAQSSLKGMKGENGLPGLDGISGPKGFPGPTGSV
GPIGLPGLQGPMGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPGPPPSTGILEFMGFPK
GKQGEKGEPGPQGFPGEEGLPGLPGFGGIGEKGEKGVPGLPGGRGLLGLDGSDGIPGRKG
HPGIPGYPGRDGVEGMKGELGDIGPPGPPIVIDREGVVISGTXXXXXXXXIPGPPGDEGV
SGLPGLPGAAGFPGLEKDALGPGGSPGIPGVKGEIGDPGRATIGLPGTPGRVGLPGLPGV
PGLPGSSRPSYLPDTILDGRPGAPGEPGQRGLPGALGPKGYKGEAGDCACDGGATRAGQK
GISGLPGAPGSHGVPGSKGIRGDPGTVGAPGLPGPPASAGQQGLPGPKGEKGDPSYATGR
GARGDRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPGEKGLPGLPGSKGHRG
ETGSPGIGYPGPSGIRGPPGDPGMDGFPGQPGLPGPPGITLPCIVPGAYGPPGTPGFPGL
PGPKGSKGFPGVPGQPGLHGSKGQPGSPGIIGLQEGPGFPGPRGEQGSQGLPGLDGTDGL
PGKMGATGLAGTKGAPGDVYGAESGAQGEPGRPGFQGDKGLTGDLGFPGPKGVDGRPGLQ
GIKGEQGNPGYTGIPGLRGPPGPGGPFGVKGKPGPMGSVGLVGAPGCQGLPGVKGLAGDI
GPQGPAGMKGFPGLDGAPGSPGERGFSGPPGPFGRDGRPGFSGPKGEKGSPGLLGFPGMP
GLPGVPGVNGFKGTPGTAGGKGSPGVLGLQGQKGDRGDVGLPGLPVLRPPEQALQFKGDK
GEPGLPGLGGFPGPRGDKGFPGSYGQPGLPGPNGSPSRESGPHGYPGFPGPSGRPGLPGQ
KGTAGILGFPXXXXXQGSDGITGTLGFPGPVGLPGPKGDQGESIGVPGSAGAKGERGDPG
FPGERGREGLKGEPGYPGSTGVNGLKGGPGDLGQEGPAGIPGNAGPRGIPGPPGPPGQPG
SAGFPGARGTAGPKGFPGFPGLNGLNGLPGTKGSPGTPGLSEPGLKGPAGLPGPKGEEGS
PGFGRGALGFPGPKGSSGDMGPPGPVGLPGLPGTPGVSLPSDIPGRPGDAGHPGADGSSG
LPGPPGPRGPPGPASDQGDTGSPGFTGVPGLRGIKGDLGLPGPVGLPGAFGFKGIRGEPG
LMGMPGKDGPPGDPGYPGLKGEMGHRGLPGQPGAPGITPQPEKITAPAGLPGLPGIDGVP
GFEGDPGFQGPVGKPGTKGLPGRSGLKGHDGLPGSPGIAGDPGPLGAPGPQGFEGAAGKP
GSLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVEGQEKSHNQDLGF
AGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVASTQISQYISRCSVC
EAPSQAVAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRAT
PFIECNGARGSCHYFANKYSFWLTTVEQSQQFVSAPPTETLKAGQLRTRVSRCQVCMKNL
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaagaatcacaaaggtggaaagaagtcttacagtgggccgtgtggtggccgtgat
tgcagtgctggatgcaaatgttttccagagaagggggcacggggtcgaccaggaccaatt
gggattcaaggaccgattggtgctcctggatttactggaccggaaggtttgacaggagca
aaaggtgagagaggagcagtgggctcccctggaccagctggacaaaaaggcgataagggc
ccaatgggagttcctggatttcaaggcatcaatgggatcccaggtcaccctggccagcct
ggatccagaggtctgcctggcattgatggctgcaatggtaccattggaagtcctggtgtt
tctggatcagatgggtttcctggcatacctgggccacctggtcgtccaggcccaaaagga
cttaaaggagaacctttttttgcccaaagcagccttaaaggaatgaagggagaaaatggt
cttcctgggttggatggaatttctggcccaaaaggttttccaggtccaacaggttctgta
ggccctataggtttgccaggtttgcagggtccaatgggtccccctggaccaccaggtcca
aaaggtaacatgggattaggctttcaaggagagaaaggagaaaagggtgatgtaggacta
cctggccctccaggtcccccaccatccactggaatacttgaattcatgggattcccaaaa
gggaagcaaggagaaaagggtgagccaggccctcaaggattccctggagaagaaggattg
cctggcctgccgggctttggaggtattggagaaaaaggagaaaagggtgtccctggcttg
ccaggtggcaggggactgctgggactggatggatctgatgggattccagggagaaagggt
catccaggtattccaggctaccctggacgtgatggagtggaaggcatgaagggtgaatta
ggtgacatcggtcccccaggccctcctatcgttattgacagggaaggtgtagtcatttca
ggtacnnnnnnnnnnnnnnnnnnnnnnngcattcctggccctccaggagacgaaggagtc
agtggtttaccgggccttccaggagctgcagggtttccaggcctggaaaaagatgcattg
ggccctggagggtctccaggtattccaggtgttaagggtgaaataggagatcctggaaga
gcgacgattggattaccaggcactcccggcagagttggtttaccgggtctgccaggagta
ccaggattgcctggttcatcacgcccttcatacctcccagatacaatcttggatggaagg
cctggggccccaggggagcctggacagagagggctgccaggagctttgggtccaaagggg
tacaaaggagaggcaggtgattgtgcttgtgatggaggagctacaagagctggtcaaaaa
ggcatctcaggtctaccaggtgcaccaggaagccatggtgtgcctgggagtaaaggcatc
agaggagacccaggcactgtgggggcaccaggactgccaggccctccggcttcagctggt
cagcaaggtcttccaggccctaagggagaaaaaggagatccgtcctatgcaacaggcaga
ggtgctcgtggggaccgtggtgcaacagcacccagaggaccttcaggcatcccaggaact
cctggcagagatggacttccaggcttaccaggtcctccaggccctccaggtgatggtggg
ctaggtttcccaggtgaaaaaggactgccaggattacctggctccaagggccatcgtgga
gagactggttctcctggcattggatatccaggtcctagtggaattcgtgggccgccaggt
gatccaggaatggatggtttcccaggacaaccaggtcttcctggccctccaggtatcacc
ttgccctgtatagttcctggagcgtatggtccccctgggactcccggctttccaggactg
ccaggtcccaaaggcagcaaaggctttcctggcgttccagggcagcctggattacatggg
tcaaaaggacagccagggtctccaggaattataggcttgcaagaaggaccaggcttccct
gggcctcgaggagagcagggatcccaaggacttccaggactggatgggacagatgggttg
cctgggaagatgggtgctacaggcttagctggaactaaaggagctcctggagatgtatat
ggtgccgagagtggagcccagggagagcctggcagacctggattccaaggtgataaaggg
ctgactggggatcttggatttccaggaccaaaaggggtagatgggagaccaggcctccag
ggtattaaaggcgaacagggtaatccaggatatacgggcatccctggcttgcgaggacct
cctggtccgggaggtccttttggcgttaagggaaaaccaggacccatgggatcagttggc
cttgtaggagcaccaggctgtcaaggacttcctggagtcaaaggactggctggggatata
ggtccacaaggccctgctggtatgaaaggcttcccaggtcttgatggtgctccagggtct
cctggggaaagaggattctcagggccacctgggccttttggtcgagacggacgtccaggt
ttctctgggccaaaaggtgagaagggatctcctggcctgcttggtttccctggcatgcca
ggcctgcctggtgtccctggggtgaatgggtttaaaggaactcctggcacagctggagga
aaaggaagtcctggggttctgggactccaaggtcaaaaaggtgacagaggtgatgttggt
ctacctggtctccctgttcttaggcctccagaacaggcactgcaattcaaaggagacaaa
ggggagcctggcttacctggacttggaggattccctggacctagaggtgataaaggattc
ccaggcagctacggacagcccggtctccctggtccaaatgggtcaccaagcagagagagt
ggtcctcacggttacccaggtttccctggtccctctggacgacctgggctgccaggacag
aagggtacagctggcatcctaggattcccannnnnnnnnnnnnttcagggttcagatggt
atcacaggaacacttggattcccagggcctgttggcctccctggtccaaagggtgaccag
ggagagtctattggtgttcctggcagtgctggagcaaagggagagcgaggggacccagga
ttcccaggagagagagggagagaagggctcaagggtgaaccaggatacccaggaagcact
ggagtgaatggactcaaaggtggcccaggagatcttggccaagaaggaccagcaggaatc
cctggaaatgctggaccgagaggaatccctgggccaccagggcctccagggcagccagga
tctgctggattccctggagctcgtggaacagcaggacccaaagggtttcctggatttccg
ggtttaaatggtctgaatggcttgccaggcacgaaagggtctcctggaacaccaggtctg
agtgaacctggactgaaaggccctgcaggtctcccaggtccaaagggtgaagaaggttct
ccaggcttcggcagaggagctctaggattccctggaccaaaaggatcatcaggagacatg
ggtccccctggtcctgtgggattacctggcttgccaggaacacctggagtttctcttcct
tctgatatacctgggagacctggggatgcaggccacccaggagctgatgggagttcaggt
ctcccaggtcctccaggaccacgagggccccctggcccagcttctgatcaaggtgacaca
ggcagtccaggtttcactggtgttcctggcttacgaggcattaagggcgacttgggactc
cctggcccagttgggctccctggggcgtttggattcaaaggtataaggggtgagcctggc
cttatggggatgccaggtaaagatgggcctccaggggatcctggttaccctgggctgaaa
ggtgaaatgggccatcgaggtctccctggccaaccaggggctccaggtataaccccacag
ccagaaaaaatcacagctcctgcaggcttacctggtctaccagggattgatggtgtccct
ggctttgaaggagatcctggattccaaggcccagttggaaaaccaggtacaaaaggtctt
ccaggcagatctggtttgaaaggacatgatggtttacctggatcacctggcatagctggg
gatccaggacctttgggagcgccaggaccacagggatttgaaggtgctgctggaaagccg
ggctcacttggtttaccaggaatgcctggtcggagcgtgggcgttggatacactttagtg
aagcacagccagtcagaccaaatcccaccttgtcccataggaatgaataagctctgggat
ggctacagcttattgtacgtggaagggcaggaaaagtcccacaaccaggatcttggtttt
gctggctcctgtttgcctcgcttcagcaccatgccttttatttactgcaacatcaatgaa
gtgtgctactatgccagccgaaatgacaagtcctactggctctccaccactgctcctatc
cccatgatgccagtggcgagcacacagatctcccagtacatcagtcgttgctcagtatgt
gaagcaccttcccaggctgtggcggtgcacagccaggatatcaccatcccacagtgtcct
gttggctggcgcagcctatggattggatactccttccttatgcacactgcagctggggca
gaaggtggaggtcagtctcttgtctcacctggctcttgcctggaggatttccgtgctact
ccattcattgaatgcaatggtgctagggggtcgtgtcattactttgcaaacaaatacagc
ttctggctgacgacagttgaacagtcgcagcagtttgtcagtgcgcctcccacagaaact
ctgaaagcaggacagcttcgaacaagggtcagccgttgccaagtgtgcatgaagaactta
tag
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integrated database retrieval system
