Struthio camelus australis (South African ostrich): 104150983
Help
Entry
104150983 CDS
T08512
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
scam
Struthio camelus australis (South African ostrich)
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scam03041
]
104150983 (YTHDC2)
Enzymes [BR:
scam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104150983 (YTHDC2)
Spliceosome [BR:
scam03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104150983 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_N
AAA_19
Ank_2
nSTAND3
AAA_22
ATPase
Ank
Ank_4
PhoH
AAA_23
AAA_7
AAA_16
AAA_29
AAA_30
SRP54
Motif
Other DBs
NCBI-GeneID:
104150983
NCBI-ProteinID:
XP_009683824
Ensembl:
ENSSCUG00000018608
LinkDB
All DBs
Position
Unknown
AA seq
1367 aa
AA seq
DB search
MEFPSSLTSIERAFIHRLSQSLGLISKSKGKGANRYLTVRKKDGSELARAVMSCCLTPNT
KHAVRSLIQRFPVTNKERTELLPKTERGNAFAIEAENREMSKTSGRLNNGIPQVPVKRGE
SEFDSFRQSLPVFEKQEEIVKIIKDNRVVLIVGETGSGKTTQIPQFLLDDCYKNGIPCRI
FCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQKQTGLKLILSSAALDANLFIRYFGSC
PIIHIQGRPFEVKEMFLEDILRSTGYTNKEMAKYKKEKQREEKQQSTLTEWYSAQENNSK
PESQRQRPVPSVAEEYDLLDDGGDTVFSQLTEKDVNCLEPWLIKEMDSCLSDIWLHKDVD
AFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSPVEQLISMGANIHCKSSNGWMA
LDWAKHFGQTEVIDLLESYSASLEFGNLDESSLVQTSGSDLSAEDRELLKAYHHSFDDEK
VDLDLVMHLLYNVCHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHS
NMQTSDQKKVLKSPPAGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDALNCVTML
KMVWISKASAIQRKGRAGRCRPGVCFRLFSKLRFQNMLEFQTPELLRMPLQELCLHTKLL
APINCPIADFLMKAPDPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGK
MVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNT
NSENWAVVKGALVAGMYPNLVHVDRESLILTGPKEKKVRFHPTSVLSQPQYKKIPPANGQ
AAAIQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVSLFCGPARLPSNALQEPSSFRVD
GVPNDSSDSEMEDKTTANLAVLKLDEWLHFKLDPEAAGLLLQLRQKWHSLFLRRMRAPSK
PWSQVDEATIRAIITVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSSNSRKSSA
ETEFSDDSSNAEKVLMKSTPPAFHQAQKYKERSVLHSKRASDDRSDQSSVKSTDSSSYPS
PCASPSPPLSGKGSKSPSPRPNMLVRYFIMKSSNLRNLDISQQKGIWSTTPSNERKLNRA
FWESSMVYLIFSVQGSGHFQGFARMSSEIGREKSQDWGSTGLGGVFKVEWIRKESLPFQC
AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDRIPLGEKNSTD
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccttcttctttgactagtattgaaagagcttttattcatcgtctcagtcag
tctcttggtctgatttctaaaagcaaagggaaaggagcaaatcgatacctgaccgtaagg
aagaaagatggatcagaactggcacgtgcagtaatgtcttgctgtttgactcccaacacg
aaacatgctgtgcggagcttaattcagagatttcctgtcacaaataaagaacggacagaa
cttctaccaaagactgagcgaggaaatgcatttgctattgaagctgaaaacagagaaatg
agcaagactagtggacggcttaacaacggtatccctcaggttcctgtgaaaagaggggaa
tcggagtttgattctttcaggcaatcgctaccagtttttgaaaaacaggaagaaattgtc
aaaataattaaagacaatagagttgttttgattgtaggagagactggatcgggaaaaact
actcaaattcctcagttcctgcttgatgactgttacaaaaatggaattccttgtcgtata
ttttgcactcagccaagacgcttggccgctattgctgtggctgaaagagtggcagcagaa
agaagagaaaaaattggccagacgatcggttatcagatccgattagaaagcagggtttct
ccaaagactttgttaacgttttgcactaatggtgtactgcttcgcaccctaatggcagga
gacagcactctatcaacagtgacacatgttattgtggatgaagtacatgagagggataga
ttcagtgatttcttgttaataaaactgagagatgtgttgcaaaaacagactggtctaaaa
ctaattctttctagtgctgctctagatgcaaatctctttattaggtattttggaagttgt
ccaataatacacatacaaggaagaccttttgaagtgaaagagatgtttctggaggacatt
ttacgaagcactggatatacaaataaagagatggcaaagtacaaaaaggagaagcagcga
gaagaaaagcagcaaagcactcttactgagtggtattctgctcaagaaaataatagcaaa
ccagaatctcagaggcaaagacctgtcccaagcgtagctgaagagtatgatctgttagat
gatggtggtgacacagtattcagtcaactgactgaaaaagatgtaaattgccttgaaccg
tggctaataaaagaaatggattcttgcctttctgacatctggctgcataaagatgttgat
gcctttgctcaggtgtttcatctcattttgactgaaaatgtcagtgttgactacaggcac
agtgaaaccagtgcaactgcactaatgattgcttcagggagaggctttttgagtccagta
gagcaactgatcagtatgggagcaaatatccactgcaaatcatccaatggctggatggct
ttggattgggctaagcactttggacagacggaggttattgaccttttggaatcctacagt
gcttcactggaatttggaaatctggatgaaagttccctggtccaaacaagtggtagtgac
cttagtgcagaggacagagaattgttgaaagcttatcatcacagttttgatgatgaaaaa
gtggatctggatctggttatgcacttactttacaatgtctgtcatagttgtgatgctgga
gcgattttaatatttcttccaggatatgatgagatagttagtctgcgagaccgtattctt
tttgatgacaagagatttgctgataatgctcacagatatcaagttttcatgctgcattca
aatatgcagacttcagatcagaagaaggtgcttaaaagtccacctgctggcatccgcaaa
ataattctttctactaatatcgcagaaaccagcatcacagtcaatgatgttgtgtttgtt
attgattcagggaagatgaaagagaagtcttttgatgcactgaattgtgttactatgtta
aaaatggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctggtcgctgt
cggcctggagtctgtttccgtctgttcagcaagctccgatttcagaatatgttggaattt
cagactccagaacttctaagaatgccacttcaggaactttgtttgcacacaaaattgctg
gctccaattaattgcccaatcgctgactttctcatgaaagctccagatcctccaccagct
ttaattgtgagaaatgctgtgcaaatgcttaagacaatagatgctatggatacttgggaa
gatctcaccgaacttggttatcatctggctgatttaccagtagagccacaccttggtaaa
atggtgttgtgtgctgttgttttgaagtgcctggatcctattcttaccattgcttgcact
cttgcctatcgagacccttttgtcctacctacacaggcgtctcaaaagcgtgcagccatg
ctgtgtagaaaacgttttactgcaggaacatttagtgaccatatggcgcttctcagggct
ttccaggcatggcagaaggcgcggagtgatggctgggagagagccttctgtgaaaagaac
tttctttctcaagccacaatggaaatcatcataggaatgagaacacagttgcttggtcag
ctcagagcttcaggttttgttagagccagaggaggaggtgatattagagatgttaacact
aactctgaaaactgggctgtagttaaaggtgctttagtggctgggatgtatccaaatcta
gtgcatgtagacagagaaagcctcattttgactggaccaaaggagaagaaagtacgattt
catcctacctctgttcttagtcaacctcagtataaaaagattcctccagcaaatgggcaa
gctgcagccattcaggcactccctacagactggcttatctatgatgaaatgacaagggct
cacaggatagcaaatatcagatgctgttcagttgtaacacctgtcactgtgtcactcttc
tgcggaccagctaggttaccaagtaatgctttgcaagagccttcatcttttcgagtggat
ggggtgcctaatgatagcagtgatagcgagatggaggataaaacaactgctaatctggca
gtactgaagctagatgaatggctccatttcaaactggatcctgaagctgctggtttgctg
ttgcaactcagacagaagtggcatagcttatttctgcgtcgtatgcgagcgccttctaaa
ccttggtctcaagttgatgaagcaactataagagcaattataactgttctaagcactgaa
gaacagtctgcaggtttgcagcagccttcagggattgggcagagaccaagacctatgtct
tctgaagaacttcctttagcatcttcgtggaggtcaagtaacagcaggaaaagctcagca
gaaacagaattctctgatgactcttctaatgctgaaaaggttctaatgaaatctacacct
ccagcgtttcaccaggcacagaagtacaaagaaagaagcgttttgcactccaagcgagct
tcagatgacaggtcagatcaatcatcagtgaagtctacagacagcagtagttatcctagc
ccatgtgccagtccctctcctccattatctggaaagggttccaaatctccctcaccaaga
ccaaatatgctggttcggtactttataatgaaaagtagcaacctgcgaaaccttgatatt
tctcagcagaaaggtatatggtctactacgccaagtaatgaacgaaaactaaatagagcc
ttttgggagagcagcatggtttacttaatattttctgtccaaggatctggacactttcag
ggttttgctagaatgtcgtcagagataggacgtgagaaaagtcaagactgggggtctaca
ggtttaggaggtgtatttaaggtggagtggatccgaaaagaaagtcttccttttcagtgt
gcccaccatttgctcaacccttggaatgacaataagaaagtacaaataagcagagatggc
caggagctggaaccacaagttggagagcagctgctacagctttgggatcgtattcccttg
ggagagaaaaattcaactgattga
DBGET
integrated database retrieval system
