Struthio camelus australis (South African ostrich): 104152490
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Entry
104152490 CDS
T08512
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104152490 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scam03032
]
104152490 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
scam03400
]
104152490 (TOPBP1)
DNA replication proteins [BR:
scam03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
104152490 (TOPBP1)
DNA repair and recombination proteins [BR:
scam03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104152490 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
104152490
NCBI-ProteinID:
XP_009686127
Ensembl:
ENSSCUG00000014195
LinkDB
All DBs
Position
Unknown
AA seq
1522 aa
AA seq
DB search
MKGSKEPFFVKFIKSSGNSEFFFKALESIKEFQSEEHLQILEEEAALSINENDKSLYICD
PFRGVVFSHLKKLGCRIVGPQAVLYCMQSQRCVPRAEYPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWIKTLWDKSQQ
SIIRYTDINMEDYACPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIEKGFCQDETIYKIEAGSKLSSTPSTSTPTSH
ASKPDNHTLSDVSHISNINLSGVNETACSSAMSSRLDPSSDELESLDISSFQAPEDLLDG
CRIYLCGFGGRKLDKMRRLINCGGGFRFNQLNEDVTHVILGEHKDELKRFLDKTTHRPHV
VTAKWLLESFSKGFLLPVEQYIPLNYQMIENPILEQPGIKSILPKNNSLSKKEAVNVVKH
QKADEDDFLSQYVNNDSTLVEGEKLTSSNFKDVTRLSIQEENQSSVYNGSLGEASAAVEG
HLFVRKRFLLLGFGEEEESCIADLIKENAGKIVSPQSRTIADYAVVPLLGCAVKPTVGEV
VTNTWLITCVEQQLLLDPQSSPLFTPVPVMEGVTPLEDCVLSFSQFTGAERDSLVYLAGL
LGARVQEFFVRRANAKKGMFASTHLVVKEPDGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADESKFLVENTDAEDKESFVTRPSKTLATVPSPDSPEQPTYLLEAGKKPAVTPLDINRFQ
SKAFQTVISHHIGKKTTPFAEGVLPQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALE
TPGGLCQKSRKLSTPLSEVIGRNLKLALANSTRHTVALTTSPRLKAAQPEVEEDSKPLAD
VVICVSKKLSKKQSELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYRSVKERGIH
IVSEHWLLESAQEYKRLPESLFPHTYNPKMSLDISAVHDARFSSSSILPSSGKPAKENEI
IPVGEDDAEDDATTDQIKETVPTEGEQVVASEAKGVLTQTLEMRENFQRQLQEIMSATSI
VKPQGQRGSLSRNSFDGFPTTPDGTRSVRNGRSRVLEALRQSRQALTDINTEPSQSEQII
WDDPTAREERARLVSNFQWPNSPSQYTEQVQNNANKNVDESAFKGSLADAEIAGIEVPEA
GDGDLIEGLKNPVCRDLETPIKEDNFIPTPQAPSIAFPLANPPVAPQPKEKTITEDEKAD
EEPEKQRKFQLSSLNPQERFDYCHLIEELGGIVLEKQCFDPSCTHIVVGHPLRNEKFLAS
MAAGKWVLHRSYLEACRRAGCFVQEEDYEWGSNSILNVLSGINVNQKKLALAAMRWRKKI
HKGRQETGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSVSLFKEATHLFAD
FSKLKPDDTRVNVAEAAAQGVNCLKPEYIADYLIQEPPPPMESYCLPEAESCLQNNKELG
TGLSQKRKAVGEMSRVKRSRIH
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtagtaaggagccgttctttgtgaagttcataaagtcttctggaaactcggag
tttttttttaaagctcttgagtccataaaagaatttcagtcagaagaacatctgcagatc
cttgaagaagaagcagcgctcagtataaacgaaaatgataagtccctttacatttgcgat
ccttttagaggcgttgttttcagtcatctcaaaaagctcggttgtagaattgttggacca
caggcagtcctatattgtatgcagtcccagcgatgcgtcccaagagctgaatatcctgtg
tataacatgaccatggccgatgtaacagtatcctgtaccagccttgaaaaagatgttagg
gaagaagttcataaatatgtgcagatgatgggtggacgtgtgtacagagacctcaatgtg
tcagtaactcaccttatagctggagaagttggtagtaagaaatacttagtagctgcttct
ctaaaaaaacctattttgctgccttcttggattaagacactgtgggataagtctcaacaa
agcataattagatatactgatattaacatggaagactacgcctgtcctgtgttccttggc
tgtacaatttgcgtaactggcttaagtagttcagacaggaaggaagtccagcgcctcacc
gctgaacatggtgggcagtatacagggcagctcaagatgaatgaatgtactcacctcata
gttcaagaaccaaaaggtcagaaatacgaatgtgccaaaaaatggaacgtgcattgtgtg
tctgtgcagtggttttctgacagtattgagaaaggcttctgtcaggatgagacaatatat
aaaatagaggctggatcaaaactaagtagtacacccagtacatcaacacctacaagtcac
gccagcaagcccgataatcatactctttcggacgtcagccacatttccaatatcaatttg
agtggtgttaatgaaactgcatgtagttctgctatgagcagcaggctggatccttcttcc
gatgagctggaaagcttggatataagttcttttcaagcccctgaagatttactagatggg
tgtcgaatctatctgtgtggctttggtggcaggaagttagataagatgagaagacttatt
aactgtggtggtggttttcgatttaatcagcttaatgaagatgtcacccatgtcatttta
ggggaacataaggatgagctgaaacgcttcttggacaagacaactcacaggcctcatgta
gtgacagcaaaatggttactggagtcattcagtaaaggctttctacttccagtggagcaa
tatattcctctaaactaccagatgatagaaaatccaattttagagcaacctggaataaaa
tcaattcttcccaaaaataacagtctctcgaagaaagaagctgtgaacgttgtaaaacac
cagaaagctgatgaagatgacttcctctctcaatatgtaaataatgattctacgttagtt
gaaggtgaaaaactaacatctagtaacttcaaagatgttactcgcttgtctattcaagaa
gagaatcaatcttctgtgtataatggttccttgggagaggcttctgcagcggttgaagga
cacttatttgtcagaaagagatttcttcttttgggttttggtgaagaggaggagtcctgc
attgcagatcttataaaggagaatgctgggaaaattgtgtcgccgcaaagcagaaccatt
gcagactatgctgtggtacccttgttggggtgcgctgtgaagccaactgttggagaggtt
gttactaatacatggctgataacatgtgtggaacagcagctccttttagatccccagtcc
agtccactgttcacaccagtcccagtaatggaaggagtcactcccctggaagattgtgtt
ctttcatttagccagttcactggtgcagagagagactccctggtgtatttggcaggattg
ctaggagcaagagtacaagaattttttgtgcgaagagccaatgcaaaaaagggaatgttt
gctagtactcatctggtggtgaaagagccggatgggtccaagtatgaagctgcaaagaag
tggaatttgcctgcagtcactgtagcttggcttttgcagtctgcaaggacaggaaagagg
gcagatgaaagcaagtttttagtcgaaaacacagatgctgaagataaggagagctttgtt
actcggcctagcaagacacttgcaactgttccatctccagattctccagaacaacctacc
tatctccttgaagctggaaaaaaaccagctgtgacccctcttgatatcaacaggttccag
agtaaagctttccaaactgtaatctctcatcatattgggaagaagacaaccccttttgca
gaaggggtactgccacagaaagaaccatctttacaccttgatacaccatccaaatttctt
tccaaagacaagttattcaagccttcttttgatgtaaaggatgctctggcagctttggaa
actccgggaggtctctgtcaaaaatccaggaagttgagtacacctctctctgaagtcatt
ggcagaaacttgaaattggcactagcaaacagcacacggcatacagtagctcttactacc
agtcctcggttgaaggctgcacaaccagaagtggaagaagattccaagcctttggctgat
gttgttatatgtgttagtaaaaaacttagcaagaagcaaagtgaactgaatgcggtagca
gcttctcttggggcagactacagatggtgctttgatgaaacagtgacgcacttcatctac
aagggaggacaaaacgacaacaacaaggagtacagatctgttaaggaaaggggtatacac
attgtttcagaacactggcttttagagagtgcccaagaatataaacggcttcccgaatct
ctctttcctcacacttacaatcccaaaatgagcctggacatcagtgcagtgcacgatgcc
agattctcttcctctagtatacttccatcaagtggaaaaccagccaaggaaaatgagatt
attccagtgggtgaagatgacgctgaagatgatgcaactactgaccaaataaaggaaacg
gtccctacggagggagaacaagttgtagcaagtgaagccaaaggagtgttaactcaaacc
ctagaaatgagagagaatttccaaaggcagctgcaggagatcatgtctgccacatcaata
gtgaaaccacaaggacaaagaggatccctctcaaggaacagttttgatggttttccaacc
acccctgatggcacgagatctgtgcgaaatggccgcagtagggtcttggaagctctaagg
cagtcccggcaagcacttaccgacataaacacagagccatcacagagtgagcagatcatc
tgggacgatcctactgcaagggaggagagagcaagacttgtcagcaactttcagtggcct
aatagtccttcccagtacactgagcaagttcagaataacgccaataagaacgtggatgag
tctgccttcaaaggctccttagctgatgccgagattgctggtatagaggttcctgaggct
ggggatggagatttgattgaaggtctaaagaatcctgtatgtagagatcttgaaacaccc
attaaagaagataactttattcccactccacaggcccccagcattgctttcccactggct
aaccctcctgtggcaccacaacccaaagagaagactattacagaagatgaaaaggctgat
gaagaaccagaaaaacagcgtaaatttcagctgtcttctcttaatcctcaagaacgattt
gattactgccatctgattgaggaattaggtggaatagtgcttgagaaacagtgctttgat
ccaagttgtacacacattgttgtgggacatcctctacgaaatgaaaaattcttggcctcg
atggcagctgggaagtgggtacttcatcgttcctacctggaggcatgtagaagagctggc
tgctttgttcaggaagaagattatgagtggggaagtaattccatacttaatgttttgtct
ggaatcaatgtaaaccagaagaaactagcactcgcagccatgagatggaggaagaaaatt
cataaagggaggcaagaaactggtattgttgagggggccttcagtggctggaaagtgatc
ctaaatgttgatcaaaccaaggaagcaggattcaggcgccttcttcagtcaggaggagca
aaagtgttttctggtcattctgtgtctctctttaaagaagctactcatctctttgctgac
ttcagtaagctgaaaccagatgacaccagggttaacgtagcagaggcagcagcccaagga
gtgaactgcttgaaaccagagtacatcgctgactacctcatccaggagccaccacctcca
atggagtcttactgcttgccagaagctgagtcctgccttcagaataacaaagaacttgga
actggattatcccagaaaagaaaagcagtgggagaaatgagcagagtcaaacgatccaga
atacactga
DBGET
integrated database retrieval system
