Struthio camelus australis (South African ostrich): 104153987
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Entry
104153987 CDS
T08512
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104153987 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scam03400
]
104153987 (MSH6)
DNA repair and recombination proteins [BR:
scam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104153987 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
THR4_C
Autoind_bind
Motif
Other DBs
NCBI-GeneID:
104153987
NCBI-ProteinID:
XP_009688453
Ensembl:
ENSSCUG00000004166
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MEGYPWWPCLIYNHPTEGTIVRGKGKSARIHVQFFDDSPTRGWVSIKYLRPYKGSSDGEA
LKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEEEMEVSESASGD
SDDCNSEEDVKTNKRVASRGRSAIRAKRRRVLDSDSDHDGSDVEFKPDVKEAASSEEASS
GVDENESSDTETDTESIAESPVKVPSKRKRGDASKPAKRNSLGNEHSGTPKRAAVVSSEA
KSKLTSFAAPENFESQANACTGGAGGFTVWEHEKLDWLQEGKRKDARRRRQDDPDYDPCT
LYVPEDYLNKCTPGLRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTAVNELGLIFMKGT
WAHSGFPEIAFGRFSDVLVQKGYKVARVEQTETPEMMEARCKSTAHPTKFDKVVRREICR
IITKGTQTYSILDCDPSENHNKYLLCVKEKDDSSGHRVYGVCFVDTSVGKFYVGQFSDDR
HCSRFRTLVAHYPPVQVLFEKGNLSVDTQKILRGSLVSCIQEGLIPGSQFWNASKTLKVL
LEEDYFKEKQNSDNGCSLPSVIKSMTSESDSLGLTPGENSELALSALGGCIFYLKRCLID
QELLSLGNFEEYVPVDVDVAKTTSSGSFFARTDRRMVLDGVTLMNLEVLQNRTNGTTEGT
LLERIDSCCTPFGKRLLKQWLCAPLCNPKSISDRLDAVEDLLAVPDKMSEVSEHLKKLPD
LERLLSKIHGIGSPLKSQNHPDSRAIFYEEIKYSKKKITDFLSALEGFKVMNEIVDAMEE
SASGFKSKVLKQLVTRKAKNPEGRFPDLNAELKRWDTAFDHNQARKTGVITPKTGFDPDY
DNALQDIKAVEEDLHEYLDKQRKLLGFKSMLYWGAGKNRYQMEIPESAISRNLPEEYELK
STRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSKDWQRAVECIAVL
DVLMSLANYSQDGDGPLCRPVILQPIDSTPPFLELKSSRHPCITKTFFGDDFIPNDIMVG
CKDEDSSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRL
GASDRIMSGESTFFVELSETSSILQHATAHSLVLVDELGRGTATFDGTAIASAVVKELAE
KIKCRTLFSTHYHSLVEDYSHSAAVRLGHMACMVENECEDPSQETITFLYKFIEGVCPKS
YGFNAARLAGIPEEVVQKGHRKAKEFEKMTISLRIFRYLCLVVDDATSDANAVQKLTTML
SHL
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttacccttggtggccatgtctcatatacaaccacccaaccgaaggaacaata
gtcagaggaaaagggaaatccgctcgtatccacgtacagttttttgatgacagtcccaca
aggggctgggtcagtatcaaatacctgaggccttacaaaggttcatcagatggggaggca
ctgaagggaggtatgttttatagtacaaagcctgaaatcaaaagagcaatggtgctagca
gatgatgcaatgagtaaagataaaactaagcgacttgagcttgcggtatgcagtgaacct
tcagacacagaggaggaggaggaggaggaaatggaggtgagtgaaagtgcatcaggtgac
agtgatgactgcaatagtgaggaggatgtgaagaccaataagcgagtagcgagtagaggg
agaagtgccataagagccaaaagaagaagggtgttggattcggacagtgatcatgatggc
tctgatgtagagttcaagcctgatgtgaaagaagcagcaagcagtgaggaagctagtagt
ggggtggatgaaaatgaatcttcggacacagagacggacacagagagcattgcagaaagt
cccgttaaagtcccttctaaacgaaagagaggagacgcaagcaagcctgctaaaaggaat
agcttaggaaatgaacattccggaacgcccaaaagagcagcggtggtttcttcagaagcc
aagtctaagctgacatcttttgcagcacctgaaaattttgaatcccaagcaaatgcttgc
actggaggagctggtggctttacagtttgggaacatgaaaagcttgactggctgcaggaa
ggaaaaaggaaagacgcacgcaggagacgacaggacgatcctgattatgacccatgtact
ctttatgtgcctgaggactatcttaacaagtgtacgccaggattgcggaggtggtggcag
ttgaaaagtcaaaactttgatgctgtgattttctacaaagttgggaagttctatgaattg
tatcatatggatgcagtcactgctgtaaatgagctgggcctgatattcatgaaaggtact
tgggcccattcaggttttccagaaattgcatttggcagattctcagatgttctagtacag
aagggctacaaggtagcccgtgttgagcaaacggaaacccctgaaatgatggaagcacgc
tgtaaatcaacggctcacccaacaaaatttgacaaggttgtacgccgagaaatatgtaga
atcatcactaaagggactcagacttacagtattctggactgtgatccctctgagaaccat
aacaaataccttctatgcgttaaagaaaaagacgactcctctggacatcgtgtatacggg
gtttgttttgttgacacatcggtagggaagttttacgtaggccagttctcagatgaccgg
cactgttcgaggtttagaactctagtagcacattaccctcctgtgcaggtactgtttgag
aaaggcaacctttctgtggacacgcagaagatactgagaggctcgcttgtttcttgcatt
caggaagggttgatccctggttcccagttctggaatgcatctaaaacgctaaaagtcctt
ctcgaagaggattatttcaaggagaaacagaactctgataacggatgttctctgccctct
gtgattaaatctatgacttcagagagtgattcactgggactaacccctggcgagaatagt
gaattagctctgtcagctcttgggggatgtatcttctatctcaaaagatgtttgattgat
caggagctgttatcattgggaaactttgaggagtatgtccctgtggatgttgatgttgca
aaaacgacaagttctggtagtttctttgccagaactgaccggcgaatggtgctggatgga
gtcaccctcatgaacttggaagtcctgcagaacagaactaatggaaccacagaaggtact
ttgttggaaaggattgattcttgttgtacgccatttggaaagcggctcctgaaacagtgg
ctctgtgctcccctctgtaatcctaaatccatcagcgatcgcctagatgctgttgaagac
cttctggcagtgcctgataaaatgtctgaagttagtgagcacctgaagaaacttcctgac
cttgaaagactcctcagcaaaattcacggtattgggtcaccgctcaaaagtcagaaccac
cctgatagcagggccatcttttatgaagaaatcaagtatagcaaaaaaaaaattactgat
tttttgtctgccctggaagggtttaaagtaatgaatgaaattgtagatgccatggaagaa
agtgccagtggcttcaaatctaaagtacttaagcagctcgtcacccgcaaggccaaaaat
ccagagggccgctttccagacttaaacgcggaacttaaaaggtgggatactgcttttgat
cataaccaggctcgaaagacaggagtgattactccaaagacgggctttgaccctgattat
gataacgcactacaggatattaaagctgtcgaggaagatctccatgagtacctggataaa
caacgtaaactgctcggattcaaatccatgctctactggggggcaggcaaaaatcgatac
caaatggaaatcccagaaagtgcaatatcccgtaatttgcctgaggaatatgagttgaag
tcaaccaggaaaggatataaacgttactggaccaaggagatcgagaagatgctggctgcg
atggttaacgctgaagaacggagagatgcagcactcaaagactgtatgaggcgtttattt
tacaacttcgataaaaatagcaaagactggcagagagcagtagaatgcattgctgtgtta
gatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacct
gtaattctacagcctattgatagtactcctccattcctggaacttaaaagttcacgccat
ccatgtattacaaaaactttttttggagacgattttattcctaatgacatcatggtaggc
tgcaaagatgaagatagcagtagtgaagcttcctgtgtgttagtaactggcccaaacatg
ggtggcaaatctacactcatgagacaggctggtctcttggttataatggctcaattggga
tgttatgtacctgctgaagtctgcaggcttacacctatcgacagagtatttacaagacta
ggtgcttcagacagaattatgtcaggggaaagtaccttctttgttgagctgagcgagacg
tccagcatcctccagcatgcaacagcgcattcccttgttcttgtggatgaactaggtaga
ggcacagctacttttgatggaacagctatagcaagtgctgttgttaaagaacttgcagag
aaaatcaagtgtcgaactttgttttccacacattaccattcactagtagaggattattca
cacagtgctgctgtgaggctcggtcacatggcatgtatggttgaaaatgagtgtgaagat
ccaagccaggaaactattacattcctgtacaaattcattgaaggtgtatgcccaaaaagc
tatggcttcaatgcagcaagacttgctggtattccagaggaggttgttcagaaggggcac
agaaaagcaaaagagtttgaaaaaatgacaatttcactgagaatattcaggtatctctgc
ttggtggtggatgatgcaacaagtgatgcaaatgctgttcagaaacttaccactatgctc
agtcatctgtaa
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