Serinus canaria (common canary): 103812979
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Entry
103812979 CDS
T05755
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
scan
Serinus canaria (common canary)
Pathway
scan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103812979 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scan03032
]
103812979 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
scan03400
]
103812979 (TOPBP1)
DNA replication proteins [BR:
scan03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
103812979 (TOPBP1)
DNA repair and recombination proteins [BR:
scan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
103812979 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
103812979
NCBI-ProteinID:
XP_009084432
UniProt:
A0A8C9KTK9
LinkDB
All DBs
Position
Unknown
AA seq
1514 aa
AA seq
DB search
MKSSEEPFFVKFIKSPGSSEYFSKALESIKEFQSEEHLQIFEEERVLNIKENDKSLYICD
PFSSMAFSHLKKLGCRIVGPQVVLYCMQSQRCVPRAEHPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGCVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
GMMRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVHWFSDSIKKGFCQDESMYKIEAGSKLSDAPNTSTPTND
TSKPPNHAFSDVSHISSISLSVVNETACSSAMSSRLDPVSDELENLDISSFQAAEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVIVGENNDELKHFLDKTAHRPHI
VTAKWLLESFGKGCLCPVEHYIPQNYQLLENPILEQPGMKSIFPRKNSLLKKDAVNIIKH
QKTAEDDFLSQYADNYSALDEVEKLASRTFSDVTNSTAQGENQPSVCNGSLAEPSALGEG
GLFFRKRFLLLGFGEEDESCIADIIKENAGEVLPLQSRTIADYAVVPLLGCTVKATVGDV
VTNTWLITCVEQQALLDLRSNPLFTPVLLMEGATPLEDCVLSFSQFMGAERDSLAYLAEL
LGARVQEFFVRKASAKKGMFASTHLVVREPNGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADESKFLVENAEAEDMDSFVTQLSKTPATVKYPDLEDPIHLLEAGKKGPVTPLDINRFQS
KAFQAVISHHTGKTTPVTQGGPLQKEPSLNLDTPSKFLSEDKIFKPSFDVKDALEALGTP
RGPEQRARRLSTPLSEVIGRNLKLALASSTSHAAALTASPQLAAVQPEVEEEPKPLADVV
IYVSKKLSKRQRELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHIV
SEHWLLESARECKRLPESLFPHTYNPKMSLDISAAQDIKLSSTSFLSTGKPAEENEIIPV
DEDDVTTDQIKETVTVGGEQIVASESKGVLTQALEMRENFQKQLQELMSATSLVKPQGQR
GSLSRSSFDGSPATPDSARSVRNGRSRVLEALRQSRQALADINTEPSQSEQIIWDDPTAR
EERARLVSNLQWPNSPSQYLEQGQSNTNKNADECALNGSVPDTEMAGIAVPEAGHGDGIE
RLKNPICRDPETPVKDNLIPTPQAPSIAFPLANPPVAPEPKEKVVTEHEKADEETEKLRK
FQLSSLNPQERIDYCHLIEKLGGIVLEKQYFDPSCTHIVVGHPLRNEKFLASMAAGKWVL
HRSYLEACRGAGCFVQEEDYEWGSNSILNVLSGINVNQKKLALAAMRWRKKIHKGKQETG
VVEGSFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSASIFKEATHLFADFSKLKPDD
PRVDVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEVESYLQNNSDLGIGSSQKRK
ALGEMSRVKRSRIH
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtagtgaggagccgttttttgtgaagttcataaagtctccagggagctcggag
tatttttctaaagctcttgagtctataaaagaattccagtcagaagaacatcttcagatc
tttgaagaagaaagagtactcaatataaaagaaaatgataaatcactttacatttgtgat
cctttcagcagcatggctttcagtcatctcaagaagcttggctgtaggattgttggacca
caggtagttctgtactgcatgcagtcacagcggtgtgtcccaagagctgagcatcccgtg
tacaacatgaccatggctgatgtcacagtgtcctgtaccagcctggagaaggacgtgagg
gaagaagttcataaatatgtacaaatgatgggtggatgtgtatacagagatctcaatgtg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacctggtagctgcttcc
ctgaagaaacccattttgcttccctcttgggttaagacattgtgggataagtctcagcaa
ggcatgatgaggtacactgatgttaacatggaagactatgcctgtcctgtgttccttggc
tgcaccatttgtgtcactggcttaagcagctccgataggaaagaagtgcagcgcctcact
gctgagcatggtgggcagtacacggggcagctcaagatgaatgaatgcactcacctcata
gtgcaagagccaaaaggtcagaagtatgaatgtgccaaaaagtggaatgtgcactgtgtg
tctgtgcactggttttctgacagcatcaagaaaggcttctgtcaggatgagtcgatgtat
aaaatagaggctggatcaaaactgagtgatgcacccaatacatcaacacctacaaatgac
accagcaagcctcctaatcacgccttttcggatgtcagccacatttccagtatcagtttg
agtgttgttaatgaaactgcatgtagttcagctatgagcagcagactggatcctgtttct
gatgagctggaaaacctggacataagttcttttcaagccgctgaagatttgttagatggg
tgtcgaatctatctctgtggcttcagtggcaggaagttggacaagatgagaaggcttatt
aattgcggtggtggcgttcgatttaatcaacttaatgaagatgttactcatgtcattgtg
ggggaaaataatgatgagctgaaacactttttggacaagacggctcacaggcctcatata
gtgacagcaaagtggttgctggagtcatttggtaaaggttgtctatgtccagtggagcac
tatatccctcaaaactaccagctgttagagaatccaattttagaacaacctggaatgaag
tcaattttcccccgaaaaaacagtctcttgaagaaagatgctgtgaacattataaagcac
cagaaaactgctgaagatgacttcctctctcaatatgcagataactattctgcactagat
gaagttgaaaaactagcatccagaaccttcagtgatgtcactaactcgactgcccaagga
gagaatcagccttctgtctgtaatgggtctttggcagagccttctgccctgggtgaagga
ggcttatttttcaggaagagatttcttcttctgggttttggtgaagaggacgagtcctgc
attgcagatattattaaggagaatgctggggaagttctgccactgcaaagcagaaccatt
gcagactatgctgtggtacctttattagggtgcactgtgaaggcaactgttggtgatgtc
gttacaaatacttggctgataacgtgcgtggagcagcaggccctattagatctcagatcc
aatccacttttcacaccagtcctgctaatggaaggagctacccctctggaagattgtgtt
ctttcttttagccagttcatgggtgcagagagagactcccttgcttatctggcagaactg
ctgggagccagagtccaagaattctttgtgcggaaagccagtgcaaaaaaaggaatgttt
gccagtacccatcttgtggtgagagaaccgaacggctcaaagtatgaagctgcgaagaag
tggaatttgccagcagtcactgtcgcttggcttttgcagtctgcaaggacaggaaagagg
gcagatgaaagcaagttcttggttgaaaatgcagaggctgaagatatggacagtttcgtt
actcagcttagcaagacaccagcaactgttaaatatcctgatttggaagatcctattcat
cttcttgaagctggaaaaaaaggacctgtgaccccacttgatatcaacaggtttcagagt
aaagctttccaagctgtaatctctcatcatactgggaagacaactcctgttacacaaggg
ggaccacttcagaaagaaccatctttaaatcttgacacaccatcaaagtttctttcagaa
gacaagatcttcaagccttcttttgatgtaaaggatgctctggaagctctgggaactcct
agaggtcctgaacaaagagccaggagactgagcacacctctctctgaagtcattggcaga
aacttgaaattggcactggcaagcagcacaagtcatgcagcagctcttactgccagccct
cagttggctgctgtacagccagaagtggaagaagagcccaagcctctagctgatgttgtt
atatatgttagtaaaaaacttagcaagaggcaaagggagctgaatgcagtagcagcttct
cttggagcagactacagatggtgctttgatgaaacagtaacacacttcatctataagggc
ggacagaatgataacaataaggagtacaaatctgttaaagaaaggggtatacatattgtt
tcagaacattggcttttagagagtgcccgagaatgtaaacggcttcctgaatctctcttt
cctcatacttacaatcccaaaatgagcctggacatcagtgcagcacaagacatcaagctc
tcctccacctcctttctttcaactggaaaaccagcagaggaaaatgagattattccagtg
gatgaagatgatgtaactactgaccaaataaaggaaacagtcactgtagggggagaacaa
attgtagcaagtgaatccaaaggagttttaacccaagcactagaaatgagggaaaacttc
caaaagcagctgcaggagctcatgtctgccacatcactagtgaaaccacaagggcaaaga
ggatccctttcaaggagcagctttgatggctctccagccactcctgatagtgcacgatct
gtgcggaatggccgcagtagggtcttggaagctctaaggcagtcccgccaggcactggca
gatataaatacagagccatcccagagcgagcagatcatttgggatgatcctactgcaagg
gaagaaagagcaagacttgtcagcaaccttcagtggcctaatagtccctctcagtacctt
gagcaaggtcagagtaataccaataagaatgcggatgagtgtgccctcaatggatctgta
cctgacacggagatggctggtatagctgttcctgaggctgggcatggagatgggattgaa
aggctgaagaatcccatatgtagagatcccgaaacgccagttaaggataacttgatccct
actccacaggcacccagcattgctttccccttggctaaccctcctgtggcaccagagccc
aaagaaaaggtggttactgaacatgagaaggctgatgaagaaacagaaaaactccgtaaa
tttcaactgtcttctcttaatcctcaagaaagaattgattactgccatctgattgagaaa
ttaggtggaatagtacttgagaaacagtactttgatccgagctgcacacacattgttgtg
ggacatcctcttcggaatgagaaattcttggcttcgatggcagctggaaagtgggtgctt
catcgttcctacctggaggcgtgtcgaggagctggctgctttgttcaggaagaagactat
gagtggggaagtaactccatacttaatgttttgtctggaatcaatgtaaaccagaagaaa
ctagcactggcagccatgaggtggaggaaaaaaattcataaagggaagcaagaaacgggt
gttgttgagggatctttcagtggctggaaagtgatcctgaatgttgatcaaaccaaggaa
gcaggattcaggcgccttcttcagtcaggaggagcaaaagtgttctctggccattctgca
tctatctttaaagaagcaactcacctctttgctgacttcagtaagctgaagccagatgac
cccagggtggacgtggcagaggcagcagcccaaggagtgaactgcctcaagcccgagtac
atcgctgactacctcatccaggatccacctccccctatggagtcttactgcttgccagaa
gttgagtcttaccttcagaataactcagatcttggaattggatcatcccagaaaagaaaa
gcactgggagaaatgagcagagtcaagagatccagaatacactaa
DBGET
integrated database retrieval system
