Serinus canaria (common canary): 103813469
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Entry
103813469 CDS
T05755
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated isoform X1
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
scan
Serinus canaria (common canary)
Pathway
scan03018
RNA degradation
scan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103813469 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
103813469 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scan03019
]
103813469 (LSM8)
03041 Spliceosome [BR:
scan03041
]
103813469 (LSM8)
Messenger RNA biogenesis [BR:
scan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103813469 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
103813469 (LSM8)
Spliceosome [BR:
scan03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103813469 (LSM8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
103813469
NCBI-ProteinID:
XP_009085024
LinkDB
All DBs
Position
Unknown
AA seq
126 aa
AA seq
DB search
MLIGFLGSKWLIKPVLHINASKNVNGSIPGMTKCFLNEISGTVAVITSDGRMIVGTLKGF
DQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEP
LNSVVH
NT seq
381 nt
NT seq
+upstream
nt +downstream
nt
atgctgataggctttttaggctctaaatggctcataaaacctgtattacatataaatgct
tcaaaaaatgttaatggttctattccaggtatgactaaatgtttccttaatgaaatatca
ggtactgttgcagtaattacttctgatgggagaatgattgtgggaacactcaaaggtttt
gatcagaccataaacttgattttggatgaaagccatgaacgagtgttcagttcttcacaa
ggagttgagcaagtggtgctgggcttatacattgtgagaggtgataacgttgctgtgatt
ggtgaaattgatgaagagacagattctgctcttgacttggggaatattcgagcagaacct
ttaaactcggttgtgcactga
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integrated database retrieval system
